PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795262.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 304aa    MW: 33969.6 Da    PI: 9.6031
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.55e-3055140385
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k++i++l+ ++ +++s +   ++ ++  + + +
  XP_009795262.1  55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDATKHEIDKLPPLQMPPPSLShffNNTNNTYMRDGP 140
                     79*************************************************************88888333323333333333222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.09856114IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-2756146IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNPSRNNSQA NKQEAAGHDH DTNKSKISRT PSSSSRQSWA GFKNPRIVRV SRSFGGKDRH  60
SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVI DWLLDATKHE IDKLPPLQMP  120
PPSLSHFFNN TNNTYMRDGP NQELLSLKES NHFDATTAFG KDKWIASNEQ ENKDGTNIGG  180
YVPLFSSQNI SSLPAGMLNS NIPFNNNYRN WEIPNSNLSL APFGNNNHTF SSQTEDNPIS  240
MSFPSGSHNL YFCPTATTLS SLVPAPFMST TNSQLNHFHF LNSSTNSQHV LPNPLAPTLN  300
YQDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1961115155Putative transcription factor PCF6
5zkt_B2e-1961115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795262.10.0PREDICTED: transcription factor TCP17-like
RefseqXP_009795263.10.0PREDICTED: transcription factor TCP17-like
TrEMBLA0A1U7XWF20.0A0A1U7XWF2_NICSY; transcription factor TCP17-like
STRINGXP_009795262.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5