PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795175.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 275aa    MW: 30589 Da    PI: 9.4128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     + +WT eE+  l+ +v+++G+g+Wk I r        ++R+  ++k++w++
   XP_009795175.1  5 KVKWTSEEEGALKAGVAKHGTGRWKNILRDPEfarflTNRSNIDLKDKWRN 55
                     579***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.043162IPR017930Myb domain
SuperFamilySSF466892.87E-15256IPR009057Homeodomain-like
SMARTSM007179.8E-7459IPR001005SANT/Myb domain
PfamPF002495.1E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-13556IPR009057Homeodomain-like
CDDcd116601.24E-19656No hitNo description
Gene3DG3DSA:1.10.10.102.9E-13112182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.3E-13112177IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.524114182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.36E-13115182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.6E-9116175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGNHKVKWTS EEEGALKAGV AKHGTGRWKN ILRDPEFARF LTNRSNIDLK DKWRNMGFST  60
AAQGSKDKSR FSRARPKTIS ALALSTVQTP LAITSAPEND AIDGSLESPQ GSKNAPKYND  120
MIFEALSSLK CSNGCDLGVI VGFIEQRHEV PQNFRRLLSS KLRRLVLKGK LERVQNCYKI  180
KDATLETEIT TPKQKDVLPR PVPNSAVKVS CETMEEAVRI AAYKIADAEE KSFLAAEAVD  240
NAERLSKMAE DAESMLQLFK EIYEQCSRGQ IVLLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795175.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016483995.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A1S4B4Z00.0A0A1S4B4Z0_TOBAC; telomere repeat-binding factor 4-like
TrEMBLA0A1U7Y8L40.0A0A1U7Y8L4_NICSY; telomere repeat-binding factor 4-like
STRINGXP_009795175.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-64MYB_related family protein