PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009795062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 31777.9 Da PI: 9.516 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++ar g++R +k+c++rw +yl XP_009795062.1 23 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 70 79******************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_009795062.1 76 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.83 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.35E-31 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-17 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-24 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.66E-12 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 19.616 | 75 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-14 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.49E-10 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MLSEIMSSEQ MGNWGIIDEG WRKGPWTAEE DRLLIEYVKL HGEGRWNSVA RLTGLKRNGK 60 SCRLRWVNYL RPDLKRGQIT PHEERIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKTKTLCA NSDKSRARLW KRQQFQQQQQ HQLQQQQQQQ INNQIDIKRV ISLFDSNENK 180 VPTMPQAKQE MTILYPNTVD QQNQVGFFYS MLNGCSSVSV PEPSSDEDIM WDGLWNLDDF 240 YGQFINTTTY NKTITTPNCL QTMATTPAFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-28 | 23 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795062.1 | 0.0 | PREDICTED: transcription factor MYB21-like | ||||
TrEMBL | A0A1U7XSM8 | 0.0 | A0A1U7XSM8_NICSY; transcription factor MYB21-like | ||||
STRING | XP_009795062.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 6e-80 | myb domain protein 305 |