PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009794813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29925 Da PI: 9.8176 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.1 | 4.8e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+ +ar +g++R +k+c++rw +yl XP_009794813.1 13 KGPWTAEEDRLLIEYVNLHGEGRWNFVARLVGLKRNGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3e-15 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+++++++++ +G++ W+tIar ++ gRt++++k++w+++ XP_009794813.1 66 RGQITPYEEKIILELHAVWGNR-WSTIARGLP-GRTDNEIKNYWRTH 110 6788999***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.941 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-17 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-18 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-11 | 15 | 60 | No hit | No description |
SMART | SM00717 | 4.5E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.974 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.6E-13 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-24 | 68 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.50E-8 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MKKWGVIEEE WRKGPWTAEE DRLLIEYVNL HGEGRWNFVA RLVGLKRNGK SCRLRWVNYL 60 RPDLKRGQIT PYEEKIILEL HAVWGNRWST IARGLPGRTD NEIKNYWRTH FKKKVKKSST 120 ENSEKAKARL LKRQQFQPQQ QQQQKLNDQI DMKRVMSLFE ENENNKVPKL SQGKQEMALL 180 YQNRADQQEQ GGFFYSMING YATVSIHEVS LNHEDIMWDY GLWNLDEFNA NLNIGSYNKS 240 SPCLQTQLAT PFC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 9e-43 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794813.1 | 0.0 | PREDICTED: transcription factor MYB59-like | ||||
TrEMBL | A0A1U7XV33 | 0.0 | A0A1U7XV33_NICSY; transcription factor MYB59-like | ||||
STRING | XP_009794813.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-81 | myb domain protein 305 |