PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009794692.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27349.1 Da PI: 4.7549 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.7 | 8.4e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri ++s r+ + kR + ++KKAeE S+LCd+eva+iifs+ XP_009794692.1 10 RICSESVRNSILKKRAASLFKKAEEFSILCDVEVAIIIFSE 50 677888899999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.091 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-18 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-15 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MARKKLRHTR ICSESVRNSI LKKRAASLFK KAEEFSILCD VEVAIIIFSE GEIQPIAYPS 60 IGQAKEILMR YLSFSEAERL KKLVKHETYL LEKVNEQEEK ISKVEKMNEG KEMDILFNQL 120 VEGKNINELD ARQLKGLLKL SAAKMDKLNE RKKQVIQPSE CPYRPSDFKP VSENVANQTI 180 DLQDVSPATS LMEDLINDPW FVENMAANQN EFGTDEFGTE PAPEEGNDNN AGDDGNPKDL 240 N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794692.1 | 1e-177 | PREDICTED: MADS-box protein AGL24-like | ||||
Refseq | XP_016468130.1 | 1e-177 | PREDICTED: MADS-box protein AGL71-like | ||||
TrEMBL | A0A1S3ZUN3 | 1e-176 | A0A1S3ZUN3_TOBAC; MADS-box protein AGL71-like | ||||
TrEMBL | A0A1U7XRI7 | 1e-176 | A0A1U7XRI7_NICSY; MADS-box protein AGL24-like | ||||
STRING | XP_009794692.1 | 1e-177 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 5e-19 | AGAMOUS-like 96 |