PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794636.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 325aa    MW: 36261.9 Da    PI: 9.3928
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-103881245
                    XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                    ++ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  XP_009794636.1 38 RDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 81
                    567899*************************9888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.7E-83484No hitNo description
SMARTSM003381.3E-837100IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4613983IPR004827Basic-leucine zipper domain
PfamPF001702.8E-74082IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-74184No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
PfamPF141446.0E-31124198IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADISPSTST DADTEDKNRF LNSQQLGAVA SDGSDRTRDQ KTLRRLAQNR EAARKSRLRK  60
KAYVQQLESS RMKLTQLEQE LQRARQQGIF ISGSGDQSQS MSGNGALAFD VEYARWLEEQ  120
NRRINELRGA VNSHAGDGEL RIIVDGILAH YDDIFRIKGD AAKSDVFHIL SGMWKTPAER  180
CFLWLGGFRS SELLKLLINQ LEPLTEQQLL AINNLQQSSQ QAEDALSQGM EALQQSLAET  240
LAGSLGPSSS SGNVANYMGQ MAMAMGKLGT LEGFIRQADN LRQQTLQQMH RILTTRQSAR  300
ALLAISDYFS RLRALSSLWL ARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0314870.0AF031487.1 Nicotiana tabacum bZIP transcription factor (TGA2.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312154.10.0transcription factor TGA2-like
RefseqXP_009794636.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_016452354.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_016509560.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018622908.10.0PREDICTED: transcription factor TGA2.2-like
RefseqXP_019232089.10.0PREDICTED: transcription factor TGA2.2-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1J6KFU50.0A0A1J6KFU5_NICAT; Transcription factor tga2
TrEMBLA0A1U7XYD30.0A0A1U7XYD3_NICSY; transcription factor TGA2-like
TrEMBLQ9SQK10.0Q9SQK1_TOBAC; BZIP transcription factor
STRINGXP_009794636.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-148TGACG motif-binding factor 6