PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009794499.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 349aa MW: 37796.5 Da PI: 8.1616

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009794499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226	7.1e-70	125	278	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstkl 91 +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ +++++ +++ +++++s+l++t+l XP_009794499.1 125 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQHNQQQQtqqlslRADSNIIPKRPRENTSSSLACTRL 219 7899***************************************************99998888555555333333333345678888888888 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + +s+ ++P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e XP_009794499.1 220 PAISSE---VGGHFPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 278 887655...5677*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.0E-68	127	278	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-26	129	171	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.8E-28	229	277	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MSGFFTLGGG GGGGNKEQEQ EQDQLATNSF LLFKNEEIYN KGFELWQQYY QLHQQRAQTP 60 QHQVQEMDFS VGVGPSNNRR IISGSSSSSG NNNIVGDDNN NNNNHNYSNS FRVMRATGGS 120 SSSGVGGMNC QDCGNQAKKD CPHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAA 180 LQQHNQQQQT QQLSLRADSN IIPKRPRENT SSSLACTRLP AISSEVGGHF PAEVSSQAVF 240 RCVKVSAIDD AEDQFAYQTA VNIGGHLFKG ILYDQGPEGR YSGGGGESSA GSGAAQQALN 300 FITGATTSTT AAAATSHQQQ HGTMFDPSVY PTPINAFMAG TQFFPPPRP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MSGFFTLGGG GGGGNKEQEQ EQDQLATNSF LLFKNEEIYN KGFELWQQYY QLHQQRAQTP  60
QHQVQEMDFS VGVGPSNNRR IISGSSSSSG NNNIVGDDNN NNNNHNYSNS FRVMRATGGS  120
SSSGVGGMNC QDCGNQAKKD CPHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAA  180
LQQHNQQQQT QQLSLRADSN IIPKRPRENT SSSLACTRLP AISSEVGGHF PAEVSSQAVF  240
RCVKVSAIDD AEDQFAYQTA VNIGGHLFKG ILYDQGPEGR YSGGGGESSA GSGAAQQALN  300
FITGATTSTT AAAATSHQQQ HGTMFDPSVY PTPINAFMAG TQFFPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM411032	8e-41	AM411032.1 Trifolium pratense AFLP fragment rc0085.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794499.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
Swissprot	Q9SD40	5e-80	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1U7Y5I6	0.0	A0A1U7Y5I6_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X2
STRING	XP_009794498.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-60	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]