PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009794498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 351aa MW: 37966.7 Da PI: 8.1616 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 228.9 | 9.4e-71 | 125 | 280 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstkl 91 +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ +++++ +++ +++++s+l++t+l XP_009794498.1 125 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQHNQQQQtqqlslRADSNIIPKRPRENTSSSLACTRL 219 7899*****************************************************99998888566666444444444446789999****** PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + +s e+ + +P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e XP_009794498.1 220 PAISSGLEVGGH-FPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 280 *99998777665.***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.8E-68 | 127 | 280 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-26 | 129 | 171 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.8E-28 | 231 | 279 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSGFFTLGGG GGGGNKEQEQ EQDQLATNSF LLFKNEEIYN KGFELWQQYY QLHQQRAQTP 60 QHQVQEMDFS VGVGPSNNRR IISGSSSSSG NNNIVGDDNN NNNNHNYSNS FRVMRATGGS 120 SSSGVGGMNC QDCGNQAKKD CPHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAA 180 LQQHNQQQQT QQLSLRADSN IIPKRPRENT SSSLACTRLP AISSGLEVGG HFPAEVSSQA 240 VFRCVKVSAI DDAEDQFAYQ TAVNIGGHLF KGILYDQGPE GRYSGGGGES SAGSGAAQQA 300 LNFITGATTS TTAAAATSHQ QQHGTMFDPS VYPTPINAFM AGTQFFPPPR P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM411032 | 8e-41 | AM411032.1 Trifolium pratense AFLP fragment rc0085. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794498.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1 | ||||
TrEMBL | A0A1U7XU90 | 0.0 | A0A1U7XU90_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X1 | ||||
STRING | XP_009794498.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-61 | Lateral root primordium (LRP) protein-related |