PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009794315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35469.5 Da PI: 9.2559 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.7e-08 | 24 | 68 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a +++ ++ +W ++a++++ g+t +++ + XP_009794315.1 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68 8********************************.******998886 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.4e-14 | 140 | 184 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky XP_009794315.1 140 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 184 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.876 | 20 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-9 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-11 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-7 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 5.9E-7 | 24 | 69 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.663 | 133 | 189 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.4E-17 | 134 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-17 | 136 | 188 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-12 | 137 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 138 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.40E-11 | 140 | 185 | No hit | No description |
Pfam | PF00249 | 1.0E-12 | 140 | 184 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEILSPAPYL SNSSWFLDEE RSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKTV 60 VDVIRQYKEL EDDVSRIEAG LITIPGYTTT SSSSSSSSPF TLEWGNSHNS FDGYKQSYVV 120 GGKRSLSNRP PEQERKKGIP WTEEEHKLFL MGLKKYGKGD WRNISRNFVI TRTPTQVASH 180 AQKYFIRQLS GGKDKRRASI HDITTINLND NQMPSPDHQK PTPIDQSTVI SQQPKSADNA 240 MHKMPFQWSQ VNNGFNYAEG SLFMSPPYGG NSYGDTKMQS QSLQQRAAMR EPYFGSQSMN 300 FQLQSAQPYY HA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-16 | 25 | 93 | 11 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-106 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794315.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_009794316.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016498888.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-141 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S4CCL4 | 0.0 | A0A1S4CCL4_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7Y696 | 0.0 | A0A1U7Y696_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009794315.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-100 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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