PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794315.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 312aa    MW: 35469.5 Da    PI: 9.2559
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-082468345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a +++ ++   +W ++a++++ g+t  +++  + 
   XP_009794315.1 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68
                     8********************************.******998886 PP

2Myb_DNA-binding45.12.4e-14140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_009794315.1 140 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 184
                      7*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.8762073IPR017884SANT domain
SMARTSM007171.2E-92173IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-112378IPR009057Homeodomain-like
CDDcd001672.51E-72470No hitNo description
PfamPF002495.9E-72469IPR001005SANT/Myb domain
PROSITE profilePS5129419.663133189IPR017930Myb domain
SuperFamilySSF466897.4E-17134188IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-17136188IPR006447Myb domain, plants
SMARTSM007172.9E-12137187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-12138184IPR009057Homeodomain-like
CDDcd001673.40E-11140185No hitNo description
PfamPF002491.0E-12140184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEILSPAPYL SNSSWFLDEE RSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKTV  60
VDVIRQYKEL EDDVSRIEAG LITIPGYTTT SSSSSSSSPF TLEWGNSHNS FDGYKQSYVV  120
GGKRSLSNRP PEQERKKGIP WTEEEHKLFL MGLKKYGKGD WRNISRNFVI TRTPTQVASH  180
AQKYFIRQLS GGKDKRRASI HDITTINLND NQMPSPDHQK PTPIDQSTVI SQQPKSADNA  240
MHKMPFQWSQ VNNGFNYAEG SLFMSPPYGG NSYGDTKMQS QSLQQRAAMR EPYFGSQSMN  300
FQLQSAQPYY HA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1625931179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-106HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794315.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_009794316.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016498888.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-141DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S4CCL40.0A0A1S4CCL4_TOBAC; transcription factor DIVARICATA-like
TrEMBLA0A1U7Y6960.0A0A1U7Y696_NICSY; transcription factor DIVARICATA-like
STRINGXP_009794315.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-100Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]