PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009794236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 293aa MW: 32223.7 Da PI: 7.4995 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.7 | 1.5e-34 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl XP_009794236.1 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 96 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-33 | 39 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.254 | 39 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-17 | 41 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 42 | 97 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-9 | 44 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.0E-27 | 137 | 183 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MKMYSALPFG MEGNAIGGGS GGVGEYQNML GDACLVLTAD HKPRLRWTAE LHERFVDAVT 60 QLGGPDKATP KTIMKAMGVK GLTLYHLKSH LQKYRLGKQS KEGAENYKDE SQESQDTGSS 120 ASGSSKVVTQ DINDGYQVTE AFRVQMEVQR RLHEQLEVQR HVQLRIEAQG KYLQTILEKA 180 CKALNYKAVA SPDLDAAREQ LSELAIKVES DCDGIVTVPS LPEVVTSFEN KNAPNMPARI 240 GDCLIDVCFP PNRSPVSPTS IGALKKRPRA FANADALPVE NNMRQVQWMM TNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-20 | 42 | 98 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794236.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X4 | ||||
Refseq | XP_016467391.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X4 | ||||
Swissprot | Q8LAJ7 | 1e-101 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A1S3ZSK4 | 0.0 | A0A1S3ZSK4_TOBAC; myb family transcription factor APL-like isoform X4 | ||||
TrEMBL | A0A1U7XX93 | 0.0 | A0A1U7XX93_NICSY; myb family transcription factor APL-like isoform X4 | ||||
STRING | XP_009794233.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 7e-99 | G2-like family protein |
Publications ? help Back to Top | |||
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