PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794055.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 323aa    MW: 36003.4 Da    PI: 6.8378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++ +k+ G g+W++ ++  g+ R++k+c++rw +yl
   XP_009794055.1 14 KGPWTPEEDEKLIEFIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding43.29.2e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_009794055.1  67 RGPFSLDEQKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.041965IPR017930Myb domain
SuperFamilySSF466895.19E-3011108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002491.6E-161461IPR001005SANT/Myb domain
CDDcd001671.66E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129417.61766116IPR017930Myb domain
SMARTSM007177.6E-1366114IPR001005SANT/Myb domain
PfamPF002498.8E-1367112IPR001005SANT/Myb domain
CDDcd001676.10E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRIPCCDKN GMKKGPWTPE EDEKLIEFIK KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SLDEQKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKHLLSMG  120
IDPDTHEPSS ASNGLLRRPP TSTSARHMAQ WESARLEAEA RLSRESQLLV PSSVERSDTD  180
HFLRMWNSEI GETFRKFKNR EKTDSQSPAS QASSCTKYGS ASGITTEVEL GVVDGSPVTG  240
SNLNEYTEWK NGQPHTEEIL QGSETSSCNA LEDSSESALQ LLLDFPSNND LSFLGHSDSC  300
SMYPFLSESS LICPKAEHAV CFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794055.10.0PREDICTED: protein ODORANT1-like
RefseqXP_016469765.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9M2D91e-121MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S3ZZJ80.0A0A1S3ZZJ8_TOBAC; protein ODORANT1-like
TrEMBLA0A1U7Y5J00.0A0A1U7Y5J0_NICSY; protein ODORANT1-like
STRINGXP_009794055.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-124myb domain protein 17