PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794036.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 335aa    MW: 38123.8 Da    PI: 7.0946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.7e-54121411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_009794036.1  12 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEicRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI 105
                     69****************************.9***************954555442556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  XP_009794036.1 106 YLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 141
                     **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-614164IPR003441NAC domain
PROSITE profilePS5100558.34212164IPR003441NAC domain
PfamPF023654.4E-2813141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMSGAGNGQL SVPPGFRFHP TDEELLYYYL RKKVSYEAID LDVIREVDLN KLEPWDLKEI  60
CRIGSGPQNE WYFFSHKDKK YPTGTRTNRA TTAGFWKATG RDKAIYLSNS KRIGMRKTLV  120
FYTGRAPHGQ KTDWIMHEYR LDDNTAEVEP LQEDGWVVCR VFKKKNYTRG FQHELGEDDQ  180
EQQLHFVDHM KSGSSDPKQN MQQPHQQACY DYASNFDGSM HLPQLLSPDL LSVNPCPQLP  240
LNANMNLNEC SHQNLLRLTS AAGAAGCSSS TFNIIPQHDK FSGDWSFLDK LLASHQGALQ  300
SQAAIGDHLV NPTGTQKYPV FHHHGLDPDL FKFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50916614167NO APICAL MERISTEM PROTEIN
1ut4_B2e-50916614167NO APICAL MERISTEM PROTEIN
1ut7_A2e-50916614167NO APICAL MERISTEM PROTEIN
1ut7_B2e-50916614167NO APICAL MERISTEM PROTEIN
4dul_A2e-50916614167NAC domain-containing protein 19
4dul_B2e-50916614167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755245e-82HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794036.10.0PREDICTED: NAC domain-containing protein 76 isoform X1
RefseqXP_009794037.10.0PREDICTED: NAC domain-containing protein 76 isoform X1
RefseqXP_016494505.10.0PREDICTED: NAC domain-containing protein 76 isoform X1
RefseqXP_016494506.10.0PREDICTED: NAC domain-containing protein 76 isoform X1
SwissprotQ9MA171e-112SMB_ARATH; Protein SOMBRERO
TrEMBLA0A1S4C0290.0A0A1S4C029_TOBAC; NAC domain-containing protein 76 isoform X1
TrEMBLA0A1U7XWP50.0A0A1U7XWP5_NICSY; NAC domain-containing protein 76 isoform X1
STRINGXP_009794036.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-103NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]