PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793883.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 369aa MW: 40577.9 Da PI: 10.0232 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 296 | 353 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+v+++tYegeH+h+ XP_009793883.1 296 DDFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERALDDPNVLIVTYEGEHDHP 353 99***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.0E-16 | 244 | 292 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-32 | 283 | 353 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.274 | 289 | 355 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 291 | 354 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-37 | 294 | 354 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 296 | 353 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MAVDLMTTGY RNNNTSTSKM EENAMQEAAA GLQSVEKLIR LLSQPQSQNH SQKQKQSFQD 60 PSIKTNSTLD FSPDYLAVAD TAVNKFKKFI SLLDRTRTGH ARFRRGPITT TSPPVLPKVD 120 KEPELLCLPA PSQNRPVEEK LKTENPQAGS KIYCPTPIQR LPPLPLNHHH HHQLVKNGST 180 SERKESTTTI NFATPSPANS FISSLTGDTE SLQPSSMTSS GFQITNLSQV SSAGRPPLST 240 SSFKRNCSSM DDSAVKCSSA GGSSGRCHCP KKRKSKVKRV VRIPAISMKM ADIPPDDFSW 300 RKYGQKPIKG SPHPRGYYKC SSIRGCPARK HVERALDDPN VLIVTYEGEH DHPFSITETP 360 PAAIVLESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 282 | 352 | 2 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793883.1 | 0.0 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-97 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A1U7XSH4 | 0.0 | A0A1U7XSH4_NICSY; probable WRKY transcription factor 7 | ||||
STRING | XP_009793883.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1220 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 4e-86 | WRKY DNA-binding protein 7 |