PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793883.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 369aa    MW: 40577.9 Da    PI: 10.0232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30296353359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+v+++tYegeH+h+
  XP_009793883.1 296 DDFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERALDDPNVLIVTYEGEHDHP 353
                     99***********************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.0E-16244292IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.0E-32283353IPR003657WRKY domain
PROSITE profilePS5081130.274289355IPR003657WRKY domain
SuperFamilySSF1182901.57E-26291354IPR003657WRKY domain
SMARTSM007745.4E-37294354IPR003657WRKY domain
PfamPF031064.3E-26296353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAVDLMTTGY RNNNTSTSKM EENAMQEAAA GLQSVEKLIR LLSQPQSQNH SQKQKQSFQD  60
PSIKTNSTLD FSPDYLAVAD TAVNKFKKFI SLLDRTRTGH ARFRRGPITT TSPPVLPKVD  120
KEPELLCLPA PSQNRPVEEK LKTENPQAGS KIYCPTPIQR LPPLPLNHHH HHQLVKNGST  180
SERKESTTTI NFATPSPANS FISSLTGDTE SLQPSSMTSS GFQITNLSQV SSAGRPPLST  240
SSFKRNCSSM DDSAVKCSSA GGSSGRCHCP KKRKSKVKRV VRIPAISMKM ADIPPDDFSW  300
RKYGQKPIKG SPHPRGYYKC SSIRGCPARK HVERALDDPN VLIVTYEGEH DHPFSITETP  360
PAAIVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21282352271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793883.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-97WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U7XSH40.0A0A1U7XSH4_NICSY; probable WRKY transcription factor 7
STRINGXP_009793883.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-86WRKY DNA-binding protein 7