PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793865.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 331aa    MW: 36964.7 Da    PI: 10.035
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.73.3e-41902142130
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                     + kkdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL+ ++k ai elt  + ++    ++++ss +++++s+++++++   
  XP_009793865.1  90 PMKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFIKSKLAIEELTTGQMNTT---SPNESSAAKKSPSINSECEDVVL 181
                     679***********************************************************9944444...45566777777788888888866 PP

             TCP  97 skksqksaasalnlak.esrakarararertrekm 130
                     s+ +q++a   lnl + esr kar+rarert +k 
  XP_009793865.1 182 SRAKQEEAI--LNLVArESRVKARERARERTIKKV 214
                     666666665..666666**************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3591214IPR005333Transcription factor, TCP
PROSITE profilePS5136933.63792150IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.265196213IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFPSGNSSGN PILQCAIPSF YSSNSSFLGL NGNQILLHQH QDQLSTHYLA ANNGHLIDNS  60
SSVMFANNVI HNKSNNQEIC YPLNKMIKKP MKKDRHSKIL TSQGHRDRRV RLSIGVARKF  120
FDLQDMLGFD KPSKTLDWLF IKSKLAIEEL TTGQMNTTSP NESSAAKKSP SINSECEDVV  180
LSRAKQEEAI LNLVARESRV KARERARERT IKKVWSQIEA KINSSSVVKE QTKIDEIKQM  240
IHGSVLVERK NIKSSSSTLG FHHPNLSGPE QAAANSHYKS SSSSTRNWDH DVNRTIMNSS  300
LSAVMATIST SSQVVQGCDQ KSWDSYQCSQ I
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2742504e-61JF274250.2 Petunia x hybrida TCP2 gene, complete cds.
GenBankJQ4001054e-61JQ400105.1 Petunia x hybrida putative transcription factor (TCP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793865.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793866.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793867.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793868.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_016445375.10.0PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_016445376.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1S3XZY90.0A0A1S3XZY9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBLA0A1U7XP940.0A0A1U7XP94_NICSY; transcription factor CYCLOIDEA
STRINGXP_009793865.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-32TCP family protein