PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793862.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 444aa    MW: 50744.5 Da    PI: 5.3501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.35.8e-44581861128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppG+rF+Ptd+elv++yLk+k+++ +l   + i e++iyk++P+ + +  k ++eekewy  ++rd+ky++g+r+nra+ +gyWkatg dk+++
  XP_009793862.1  58 LPPGYRFNPTDSELVTYYLKRKLDSLPLYP-NRIYEINIYKYNPELIAAhvKPSTEEKEWYVLTPRDRKYRNGNRPNRAAGDGYWKATGADKQIK 151
                     79*************************888.67**************85235556889************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++k+  +glkk+Lv+y g+ pkgekt+W+mheyr+
  XP_009793862.1 152 DNKNVIIGLKKSLVYYIGKPPKGEKTNWIMHEYRV 186
                     *9999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-5354213IPR003441NAC domain
PROSITE profilePS5100552.32958213IPR003441NAC domain
PfamPF023656.8E-2559186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MENHHSSSPP TNNANISKGN LTDQMPINEL QVIAVLSNNN KNGEITSAEE IDAYINNLPP  60
GYRFNPTDSE LVTYYLKRKL DSLPLYPNRI YEINIYKYNP ELIAAHVKPS TEEKEWYVLT  120
PRDRKYRNGN RPNRAAGDGY WKATGADKQI KDNKNVIIGL KKSLVYYIGK PPKGEKTNWI  180
MHEYRVPDIP NLAERDINDW KLDEWVLCRI YKKSDRDNTM FTQRKRIRDA YETKTGRGNS  240
NDSVQEFNDD GQIGESSDGN LSNEFANITF EATSQDSTRH DSINCIQDTL HSNNRVPTFH  300
PQVPTRFGNF TQSCVPEFCD MPWSTTNAYD YQSIVTNDKF HYPPSPMKIE PISSMMANNN  360
FMGQDDNMKS KGFGDIPCFS SCIGGYIGQD YEYMGLEKMG SGEFIDQYLV NCEMVNSTMY  420
LPEYNMKNLV NGESSSQSNT ISGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-485721316165NO APICAL MERISTEM PROTEIN
1ut4_B2e-485721316165NO APICAL MERISTEM PROTEIN
1ut7_A2e-485721316165NO APICAL MERISTEM PROTEIN
1ut7_B2e-485721316165NO APICAL MERISTEM PROTEIN
4dul_A2e-485721316165NAC domain-containing protein 19
4dul_B2e-485721316165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793862.10.0PREDICTED: NAC domain-containing protein 102-like
TrEMBLA0A1U7XP910.0A0A1U7XP91_NICSY; NAC domain-containing protein 102-like
STRINGXP_009793862.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139361213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-56NAC domain containing protein 25