PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793854.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 323aa    MW: 36761.5 Da    PI: 5.2509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.63e-24114175159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDg++WrKYGqK++  s++pr+Y+rCt++   +C+++k+v++ +++p ++ +tY g+H+++
  XP_009793854.1 114 VDDGHAWRKYGQKQILHSTYPRHYFRCTHKydqNCQATKQVQKIQDNPPLFRTTYYGNHTCK 175
                     59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2599175IPR003657WRKY domain
PROSITE profilePS5081119.726109172IPR003657WRKY domain
SuperFamilySSF1182904.58E-24111176IPR003657WRKY domain
SMARTSM007745.3E-36114176IPR003657WRKY domain
PfamPF031062.6E-23115175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESPLPEKSS ADLKRAIDGL IRGQEFTRQL KEIIKKPLAT IMAEDLVGKI MNSFSETLSV  60
INSGESDEDT AEVKSPEDSS GSCKSTTTSF KDRRGCYKRR KTSETNTKES SDLVDDGHAW  120
RKYGQKQILH STYPRHYFRC THKYDQNCQA TKQVQKIQDN PPLFRTTYYG NHTCKPFPRV  180
SQIILDTPIH GDSSILLSFD RNNNNNNYSS IQNVNYNYQP YNIPTFPSIK QETKEEVFQR  240
SCTFYPKIED QNQSSNSDNF LLANDDHLST LTVFEASDGH MAATLSPDVI SSGVYSSCTT  300
STDNLEIDFD FEESLWNFEG YNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22114175869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569181e-94EU056918.1 Solanum tuberosum WRKY transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793854.10.0PREDICTED: probable WRKY transcription factor 70
RefseqXP_016502265.10.0PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ92e-50WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A1S4CMA50.0A0A1S4CMA5_TOBAC; probable WRKY transcription factor 70
TrEMBLA0A1U7Y3M90.0A0A1U7Y3M9_NICSY; probable WRKY transcription factor 70
STRINGXP_009793854.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-43WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]