PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793812.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 663aa    MW: 74458.9 Da    PI: 9.9045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-101364348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
   XP_009793812.1 13 TWSTWEELLLAFAVKRHGLNDWESVAMELQsrsslpALLTAQICKDKYRDLR 64
                     7**********************************9889*********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.353664IPR017877Myb-like domain
SuperFamilySSF466891.09E-6871IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-5871IPR009057Homeodomain-like
SMARTSM007174.3E-41066IPR001005SANT/Myb domain
PfamPF002493.4E-81263IPR001005SANT/Myb domain
CDDcd001670.007121963No hitNo description
SMARTSM002978.7E-14300405IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-15305406IPR001487Bromodomain
SuperFamilySSF473702.49E-17306403IPR001487Bromodomain
CDDcd043691.06E-15307400No hitNo description
PfamPF004391.5E-10311390IPR001487Bromodomain
PROSITE profilePS5001412.292315386IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEKESGTTKT TTTWSTWEEL LLAFAVKRHG LNDWESVAME LQSRSSLPAL LTAQICKDKY  60
RDLRRRFINK NNSYHDEQFN DVIDDGLDGD GDVTIPWIEE LRQLRVAELK QEVQRYDLSI  120
QSLQLKVKKM EEEREQSLKE ESSDDGQKPD LEDVKEERSQ NDKNSGADGK PEESTGKAVS  180
SEESDRENRS FNESNSTENR EIGVKNEPEP VETGEFRPVQ EVKPVSEEDS YNGSSSDRHE  240
EKKISRESGE SKEETKENSD VQSTATLTKK KRQRGGDGGR SCGDAVETGS PAVGLNKGEG  300
AAKSEPLIEF LDIIRSHKRG SMFKRRLDSQ KTDKYKSMIR RHMDLETVQA RIDDGSYCSC  360
PSIFYLDLLL IFNNAIVYFP KSSPESTAAN EFRGIVMEEL KKKRTRQKDS SPGPGPLRIQ  420
PKPELERSDS LLAKHKSTAP IVVCRKRSSI SAKAAASGNI KPEKQDDSKP PLNPKPPIKT  480
SSNEEECSIK LGMKEKPVTG VRSMRRSNKG RPNNNASQSN NNQTTNTKQT NTNADKKEEA  540
KTEKKKEEAK KRGAAADFLK RIKKNSPTKG TLMETLKNPT EDVVVKGNKR EQQKKKVDER  600
RETPVKRSGG SGGGGGKEEG SPSKRTVGRP PKRGGKETVQ EKRGRENSEK DDSSKRPKKR  660
SRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273KKKRQR
2654662KRPKKRSRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793812.10.0PREDICTED: muscle M-line assembly protein unc-89-like
TrEMBLA0A1U7XP400.0A0A1U7XP40_NICSY; muscle M-line assembly protein unc-89-like
STRINGXP_009793812.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-86DNA-binding bromodomain-containing protein