PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793776.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 268aa    MW: 31228.9 Da    PI: 6.2609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
   XP_009793776.1 19 KGAWSPEEDQKLKSYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 66
                     79******************99************************97 PP
2Myb_DNA-binding32.22.5e-1072117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE    ++  ++lG++ W+ Ia++++ gR ++++k++++++l
   XP_009793776.1  72 RGPFSIEERGTVIKTYQELGNR-WSEIAARLP-GRADNEVKNFFHTHL 117
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.7841470IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-221569IPR009057Homeodomain-like
SuperFamilySSF466894.69E-2717113IPR009057Homeodomain-like
SMARTSM007171.6E-121868IPR001005SANT/Myb domain
PfamPF002491.1E-131966IPR001005SANT/Myb domain
CDDcd001671.53E-92166No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2170121IPR009057Homeodomain-like
SMARTSM007173.4E-771119IPR001005SANT/Myb domain
PROSITE profilePS5129414.22471121IPR017930Myb domain
PfamPF002493.9E-972117IPR001005SANT/Myb domain
CDDcd001672.66E-474117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSSVPQQQQE STNMEEIKKG AWSPEEDQKL KSYIMRYGIW NWSHMPKFAG LSRTGKSCRL  60
RWMNYLRPDV KRGPFSIEER GTVIKTYQEL GNRWSEIAAR LPGRADNEVK NFFHTHLKKH  120
LGVKNDAPLK STRAKSNKRV VKKTKGNERT NGDKRSPEVS SSDSSSIITF EENQMMDVSV  180
NLSQIYYNIV DQPNIDMEIR PVILESNPDD GTYNSNCQQL HDQFEYSHSI SECCSSFDSI  240
DQFDMSSFWF DELWDAETYE FLRDVITY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231611924126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754423e-33HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755153e-33HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793776.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_016477908.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX84e-46MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A1S4AN840.0A0A1S4AN84_TOBAC; myb-related protein Myb4-like
TrEMBLA0A1U7XVY40.0A0A1U7XVY4_NICSY; myb-related protein Myb4-like
STRINGXP_009793776.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-46myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]