PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 727aa MW: 79996.5 Da PI: 6.1138 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4e-20 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r+eL k+lgL+ q+k+WFqN+R+++k XP_009793614.1 59 KKQYHRHTQHQIQELEAFFKECPHPDDKQRKELGKRLGLEPLQIKFWFQNKRTQMK 114 688999***********************************************998 PP | |||||||
2 | START | 220.3 | 6.1e-69 | 246 | 467 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+ +ep+W +ss e++ ++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ +a ka+tl XP_009793614.1 246 ELAVAAMEELIRLAETREPLWIQSSensaEILSEEEYARTFPRGVGpkslgLKSEASRESAVVIMNHINLVEILMDVN-QWTSFFAglvsKATTL 339 57899********************99999***********99777********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ + + R++++pSg+li++++ng+skvtw+ehv XP_009793614.1 340 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPTS---VMSRCRRRPSGCLIQELPNGYSKVTWIEHV 431 ***********************************************************966...5***************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r + +++r+lv+sg+a+gak+wvatl+rqce+ XP_009793614.1 432 EVDDRAVNSIYRPLVNSGMAFGAKRWVATLDRQCER 467 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.68E-19 | 45 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-21 | 47 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.536 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-18 | 58 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.6E-18 | 59 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-18 | 59 | 117 | No hit | No description |
SuperFamily | SSF55961 | 7.56E-40 | 236 | 469 | No hit | No description |
PROSITE profile | PS50848 | 47.832 | 237 | 470 | IPR002913 | START domain |
CDD | cd08875 | 1.12E-128 | 241 | 466 | No hit | No description |
SMART | SM00234 | 2.3E-68 | 246 | 467 | IPR002913 | START domain |
Pfam | PF01852 | 4.5E-58 | 247 | 467 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.2E-7 | 315 | 467 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.98E-23 | 485 | 719 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MFQQNMFDSH NFLLDLSHKT SENEMDLIRD DEFESKSGAD TTELAPSGDD QDPNKRPKKK 60 QYHRHTQHQI QELEAFFKEC PHPDDKQRKE LGKRLGLEPL QIKFWFQNKR TQMKAHHERH 120 ENTQLRNENE KLRAENIRYK EALTTATCPN CGGPAAVGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLNYPQLP SPIPPTRSLD LGVANFGHQL GEMYNGGALL RSISGSTDAD 240 KPMIIELAVA AMEELIRLAE TREPLWIQSS ENSAEILSEE EYARTFPRGV GPKSLGLKSE 300 ASRESAVVIM NHINLVEILM DVNQWTSFFA GLVSKATTLE VLSTGVAGNY NGALQVMTAE 360 FQVPSPLVPT RENYFVRYCK QHADGTWAVV DVSLDNLRPT SVMSRCRRRP SGCLIQELPN 420 GYSKVTWIEH VEVDDRAVNS IYRPLVNSGM AFGAKRWVAT LDRQCERLAS VMANNIPTGD 480 VITSPEGRKS TLKLAERMVM SFCAGVGAST AHTWTTLSGS GADDVRVMTR KSIDDPGRPP 540 GIVLSAATSF WLPVPTKRVF DFLRNENSRN EWDILSNGGL AQEMAHIANG RNSGNSVSLL 600 RVNSGNSSQN NMLILQESCT DSTGSYVIYA PVDIAAMNVV LSGGDPDYVA LLPSGFAILP 660 DGSTTTNGVG INPETNAAGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIKA 720 SIVCESA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793614.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_009793615.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_009793618.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A1U7Y2Y7 | 0.0 | A0A1U7Y2Y7_NICSY; homeobox-leucine zipper protein MERISTEM L1-like | ||||
STRING | XP_009793614.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |