PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793302.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 381aa    MW: 42116.8 Da    PI: 7.7449
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1750110257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++ +eq+++Le+ F++   +p ++e++++ +kl    ++ +++V++WFqNr+ + k+
  XP_009793302.1  50 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 110
                     89*****************99*************************************995 PP
2Wus_type_Homeobox111.73.8e-3649112265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
     XP_009793302.1  49 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 112
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1246115IPR009057Homeodomain-like
PROSITE profilePS5007110.38246111IPR001356Homeobox domain
SMARTSM003894.9E-948115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-649118IPR009057Homeodomain-like
CDDcd000862.90E-849112No hitNo description
PfamPF000464.3E-1550110IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNQW QHDINSTLIQ RAPCNPVGGG GCEERSPEPK PRWNPRPEQI  60
RILEAIFNSG MVNPPRDEIR KIRAKLQEYG QVGDANVFYW FQNRKSRSKH KQRHLQNKAQ  120
QTHNNTNIAN SHVAITAPTS SSSSSDKSSP NSTGHHKSSL TFSIGSANVM DLLNSPTASV  180
NQQQQQNYNF QSANNEFLST EPFFFTVQPP TPTQSPAVIT QGFCIPDSTG FSHVSNSSGH  240
LFLSEWMGIS QTPSKKAEDE KINLQSQLNY AVTSAPTTNT HSTVFPLTST TIPTISHIQG  300
LVEPTDAGPT RSTVFINDVA FEVGLGPFNV REVFGDDAVL IHSSGEPLIT NEWGLTLQPL  360
QHGAFYYLLR TSTPSNTIDL I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793302.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X2
RefseqXP_016489291.10.0PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBLA0A1S4BK940.0A0A1S4BK94_TOBAC; WOX9
TrEMBLA0A1U7XMM40.0A0A1U7XMM4_NICSY; WUSCHEL-related homeobox 9-like isoform X2
STRINGXP_009793301.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-60homeobox-3