PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 382aa MW: 42215.9 Da PI: 7.7449 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.7e-17 | 51 | 111 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ +kl ++ +++V++WFqNr+ + k+ XP_009793301.1 51 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 111 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 111.7 | 3.8e-36 | 50 | 113 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq XP_009793301.1 50 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 113 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.382 | 47 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-12 | 47 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-9 | 49 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.72E-8 | 50 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 50 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.3E-15 | 51 | 111 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNQW QHDINSTLIQ RAPCNPVVGG GGCEERSPEP KPRWNPRPEQ 60 IRILEAIFNS GMVNPPRDEI RKIRAKLQEY GQVGDANVFY WFQNRKSRSK HKQRHLQNKA 120 QQTHNNTNIA NSHVAITAPT SSSSSSDKSS PNSTGHHKSS LTFSIGSANV MDLLNSPTAS 180 VNQQQQQNYN FQSANNEFLS TEPFFFTVQP PTPTQSPAVI TQGFCIPDST GFSHVSNSSG 240 HLFLSEWMGI SQTPSKKAED EKINLQSQLN YAVTSAPTTN THSTVFPLTS TTIPTISHIQ 300 GLVEPTDAGP TRSTVFINDV AFEVGLGPFN VREVFGDDAV LIHSSGEPLI TNEWGLTLQP 360 LQHGAFYYLL RTSTPSNTID LI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793301.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9-like isoform X1 | ||||
TrEMBL | A0A1U7XUH1 | 0.0 | A0A1U7XUH1_NICSY; WUSCHEL-related homeobox 9-like isoform X1 | ||||
STRING | XP_009793301.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5942 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-61 | homeobox-3 |