PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793274.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 544aa    MW: 59852.5 Da    PI: 8.742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-17249298255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f +Lre++P++    ++K +Ka+ L ++veYI+ Lq
  XP_009793274.1 249 RSKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVVEYIQFLQ 298
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.0E-23244318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-18245311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.622247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-14249302No hitNo description
PfamPF000106.1E-15249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGHLK THDFLQPLEQ ARKTVGKAET  60
KVEVEAIEKT PSAAHILPGG IGTYSISYLQ QRIPTPEANI FAVTQASSTD REDRNSNCSS  120
YSGSGFAIWN ESAIKKGKTG KENVAGDRHV LREAGVNIGG GKPTTSLERQ SQLSSNHNHN  180
TATLSTLSSA QQSSAVENQS FLNMMRSAKN AHEEDDDEEE EFIVKKESPS HSRVKVDRKS  240
SDQKPNTPRS KHSATEQRRR SKINDRFLKL REIIPHSDQK RDKASFLLEV VEYIQFLQEK  300
VHKYEGSYQG SENKPSTLQW NKCQRMTQGF VDQSQGTNSA SSPAIICAGM FDESKIAISA  360
TSPVNGQTLE PNRISAVKQS SQQSELTNTV ATLCKQPNAF PFCGSTSIAS LQSRLAPDAD  420
SLELKSQPQF WLTRSDMTDC AVTNDKLKGQ EASIEGGTIS ISSVYSQRLL NTLKQALQSS  480
GVDLSQASMS VKIDLGKRVN DSLNASVSNF KGDNISTSNR PNPQLIDSST REESVHAFKR  540
LKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-113HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793274.10.0PREDICTED: transcription factor BIM2-like isoform X3
RefseqXP_016493372.10.0PREDICTED: transcription factor BIM2-like isoform X3
TrEMBLA0A1S4BWU50.0A0A1S4BWU5_TOBAC; transcription factor BIM2-like isoform X3
TrEMBLA0A1U7Y2050.0A0A1U7Y205_NICSY; transcription factor BIM2-like isoform X3
STRINGXP_009793272.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-93bHLH family protein