PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793273.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 546aa    MW: 60024.7 Da    PI: 8.742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-17251300255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f +Lre++P++    ++K +Ka+ L ++veYI+ Lq
  XP_009793273.1 251 RSKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVVEYIQFLQ 300
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.1E-23246320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-18247313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.622249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-15251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-14251304No hitNo description
SMARTSM003534.6E-13255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGHLK THDFLQPLEQ ARKTVGKAET  60
KVEVEAIEKT PSAAHILPGG IGTYSISYLQ QRIPTPEANI FAVTQASSTD REDRNSNCSS  120
YSGSGFAIWN ESAIKKGKTG KENVAGDRHV LRGVNIGGGK PTTSLERQSQ LSSNHNHNTA  180
TLSTLSSAQQ SSAVENQSFL NMMRSAKNAH EEDDDEEEEF IVKKESPSHS RGDLSVKVDR  240
KSSDQKPNTP RSKHSATEQR RRSKINDRFL KLREIIPHSD QKRDKASFLL EVVEYIQFLQ  300
EKVHKYEGSY QGSENKPSTL QWNKCQRMTQ GFVDQSQGTN SASSPAIICA GMFDESKIAI  360
SATSPVNGQT LEPNRISAVK QSSQQSELTN TVATLCKQPN AFPFCGSTSI ASLQSRLAPD  420
ADSLELKSQP QFWLTRSDMT DCAVTNDKLK GQEASIEGGT ISISSVYSQR LLNTLKQALQ  480
SSGVDLSQAS MSVKIDLGKR VNDSLNASVS NFKGDNISTS NRPNPQLIDS STREESVHAF  540
KRLKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-114HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793273.10.0PREDICTED: transcription factor BIM1-like isoform X2
RefseqXP_016493371.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A1S4BWT80.0A0A1S4BWT8_TOBAC; transcription factor BIM1-like isoform X2
TrEMBLA0A1U7XQT80.0A0A1U7XQT8_NICSY; transcription factor BIM1-like isoform X2
STRINGXP_009793272.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-94bHLH family protein