PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 339aa MW: 37680 Da PI: 6.8405 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.5 | 1.3e-28 | 138 | 197 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp v+e+tY+++H++ XP_009793203.1 138 EDGYTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDNDPYVFEVTYRSQHTC 197 7****************************999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-27 | 135 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 136 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 137 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-26 | 138 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.828 | 138 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDETTATILY GCKLAKELEA NLPNWANQPH LTLNKTEEIV AVFNNVKERL SYHHHHQQAL 60 EFFHAAEMLG ERPATAAFAV HGLPLAQESD QVGVSDSSRG GGSSSSSSQR QRRRPGDTDT 120 RTVRVAAPRM GNLELPPEDG YTWRKYGQKE ILGSRFPRAY YRCTHQKLYN CPAKKQVQRL 180 DNDPYVFEVT YRSQHTCYMS ATAPTVPPPS VEEITHQTTT ILPPPLPLPP PTSASLRAHW 240 LSMDIKPQRD QGTSTIPFHI QRDFGHSTGG SLASICNVES RDGGAGPSGG RYGREVDYQL 300 PVVDMADAMF NYSGSSSNNS MDIIFSSIDD KWDSAEKKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-18 | 138 | 197 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-102 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793203.1 | 0.0 | PREDICTED: WRKY transcription factor 55 isoform X2 | ||||
Swissprot | Q9SHB5 | 9e-55 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A1U7XQN6 | 0.0 | A0A1U7XQN6_NICSY; WRKY transcription factor 55 isoform X2 | ||||
STRING | XP_009793195.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-44 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
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