PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009793195.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 341aa MW: 37939.3 Da PI: 6.9906

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009793195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.5	1.4e-28	140	199	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp v+e+tY+++H++ XP_009793195.1 140 EDGYTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDNDPYVFEVTYRSQHTC 199 7**************************999************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-27	137	200	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-25	138	201	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	139	201	IPR003657	WRKY domain
Pfam	PF03106	7.0E-26	140	199	IPR003657	WRKY domain
PROSITE profile	PS50811	20.828	140	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MDETTATILY GCKLAKELEA NLPNWANQPH LTLNKTEEIV AVFNNVKERL SYHHHHQQAL 60 EFFHAAEMLG ERPATAAFAV HGLPLAQESD QVGVSDSSRG GGSSSSSSQR QRRRCRPGDT 120 DTRTVRVAAP RMGNLELPPE DGYTWRKYGQ KEILGSRFPR AYYRCTHQKL YNCPAKKQVQ 180 RLDNDPYVFE VTYRSQHTCY MSATAPTVPP PSVEEITHQT TTILPPPLPL PPPTSASLRA 240 HWLSMDIKPQ RDQGTSTIPF HIQRDFGHST GGSLASICNV ESRDGGAGPS GGRYGREVDY 300 QLPVVDMADA MFNYSGSSSN NSMDIIFSSI DDKWDSAEKK E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-17	140	199	9	68	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00304	DAP	Transfer from AT2G40740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-102	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793195.1	0.0	PREDICTED: WRKY transcription factor 55 isoform X1
Swissprot	Q9SHB5	3e-53	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	A0A1U7Y339	0.0	A0A1U7Y339_NICSY; WRKY transcription factor 55 isoform X1
STRING	XP_009793195.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9280	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	6e-45	WRKY DNA-binding protein 55

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]