PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793195.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 341aa    MW: 37939.3 Da    PI: 6.9906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.4e-28140199258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp v+e+tY+++H++
  XP_009793195.1 140 EDGYTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDNDPYVFEVTYRSQHTC 199
                     7****************************999**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-27137200IPR003657WRKY domain
SuperFamilySSF1182902.22E-25138201IPR003657WRKY domain
SMARTSM007741.5E-36139201IPR003657WRKY domain
PfamPF031067.0E-26140199IPR003657WRKY domain
PROSITE profilePS5081120.828140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDETTATILY GCKLAKELEA NLPNWANQPH LTLNKTEEIV AVFNNVKERL SYHHHHQQAL  60
EFFHAAEMLG ERPATAAFAV HGLPLAQESD QVGVSDSSRG GGSSSSSSQR QRRRCRPGDT  120
DTRTVRVAAP RMGNLELPPE DGYTWRKYGQ KEILGSRFPR AYYRCTHQKL YNCPAKKQVQ  180
RLDNDPYVFE VTYRSQHTCY MSATAPTVPP PSVEEITHQT TTILPPPLPL PPPTSASLRA  240
HWLSMDIKPQ RDQGTSTIPF HIQRDFGHST GGSLASICNV ESRDGGAGPS GGRYGREVDY  300
QLPVVDMADA MFNYSGSSSN NSMDIIFSSI DDKWDSAEKK E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-17140199968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-102HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793195.10.0PREDICTED: WRKY transcription factor 55 isoform X1
SwissprotQ9SHB53e-53WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A1U7Y3390.0A0A1U7Y339_NICSY; WRKY transcription factor 55 isoform X1
STRINGXP_009793195.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-45WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]