PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793105.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 43408.8 Da PI: 8.0061 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.6e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yL++k+++k+l++ e ik++diyk++PwdLpk ++ +e+ewyfF++rd+ky++++r+nr+t +g+Wkatg+d++++s+ XP_009793105.1 16 MLPGFRFHPTDEELVGFYLRRKIQHKTLSI-ELIKQLDIYKFDPWDLPKLATIGEREWYFFCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSS 109 579***************************.89***************8888899***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_009793105.1 110 eGSKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRL 143 56677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-58 | 15 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.748 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MMEERNETDG KIDEMMLPGF RFHPTDEELV GFYLRRKIQH KTLSIELIKQ LDIYKFDPWD 60 LPKLATIGER EWYFFCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSE GSKCIGLKKS 120 LVFYKGRAAK GTKTDWMMHE FRLPSITDST TPKRFLDKNM LPNDSWAICR IFKKANSNTH 180 RAFSHSWVSP QISSNTTPHF QTSNHFTPNE MSFIAKSTSS AIQFSNDLQN SSMASFSPID 240 LSPYRIINPM ITSHRPPQQI SISNHDSTTS YTLSNSYTNY LNIDASSLLL NMSSSILGDY 300 NNFSITLPEN IEENQIQEAG NLVKELPNVN VDHMQEQWGN VRSVIGFPVN ADIDAWNKSK 360 LLWDSSPCPS EMSTSYSTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-57 | 6 | 177 | 10 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793105.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
Refseq | XP_016478918.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-106 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1S4AQZ4 | 0.0 | A0A1S4AQZ4_TOBAC; protein FEZ-like | ||||
TrEMBL | A0A1U7Y2V5 | 0.0 | A0A1U7Y2V5_NICSY; protein FEZ-like | ||||
STRING | XP_009793105.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-106 | NAC family protein |
Publications ? help Back to Top | |||
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