PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009792995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 23519.8 Da PI: 9.9728 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 54 | 98 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++++ + +G+ +W++I++ + +Rt q+ s+ qky XP_009792995.1 54 PWTEDEHRLFLKGLEIYGKSNWAKISKDLLPNRTHIQIASHAQKY 98 7***************************999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.508 | 47 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 49 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-14 | 50 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-14 | 50 | 101 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.4E-9 | 51 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.19E-10 | 54 | 99 | No hit | No description |
Pfam | PF00249 | 2.8E-11 | 54 | 98 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAWNCRLCGR SGRNQRTCSE KGKSIKLFGV KISTTTPKKD SANNYGRKIK KAIPWTEDEH 60 RLFLKGLEIY GKSNWAKISK DLLPNRTHIQ IASHAQKYFM FKRLAAASNE RKNRKKPSIF 120 DVHSEEIIIS ERETSNVSEH AIQEHVQETG GNIPSQVPLE IIKEHAQDHQ ETTAISSERN 180 HGYNFFIIPC FMPVLNLPVF HSFCN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792995.1 | 1e-153 | PREDICTED: uncharacterized protein LOC104239942 | ||||
Refseq | XP_016493750.1 | 1e-153 | PREDICTED: uncharacterized protein LOC107813057 | ||||
TrEMBL | A0A1S4BXX8 | 1e-152 | A0A1S4BXX8_TOBAC; uncharacterized protein LOC107813057 | ||||
TrEMBL | A0A1U7Y2J4 | 1e-152 | A0A1U7Y2J4_NICSY; uncharacterized protein LOC104239942 | ||||
STRING | XP_009792995.1 | 1e-153 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7454 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 5e-21 | MYB_related family protein |