PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792992.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 285aa    MW: 32075.7 Da    PI: 7.3104
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ed++l+d++  +G g+W++++   g+ R +k+c++rw +yl
   XP_009792992.1 16 RGLWSPDEDQKLKDYILTYGHGCWSSVPINAGLQRNGKSCRLRWINYL 63
                     788*******************************************97 PP
2Myb_DNA-binding50.25.9e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++teE++ ++ ++ +lG++ W  Ia++++ gRt++++k++w++yl
   XP_009792992.1  69 RGTFSTEEEDTILTLHGMLGNK-WCQIAQHLP-GRTDNEIKNHWHSYL 114
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-211066IPR009057Homeodomain-like
PROSITE profilePS5129415.8821163IPR017930Myb domain
SuperFamilySSF466891.83E-2814110IPR009057Homeodomain-like
SMARTSM007175.4E-111565IPR001005SANT/Myb domain
PfamPF002495.6E-131663IPR001005SANT/Myb domain
CDDcd001671.33E-91963No hitNo description
PROSITE profilePS5129424.9464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2467118IPR009057Homeodomain-like
SMARTSM007172.2E-1568116IPR001005SANT/Myb domain
PfamPF002491.5E-1469114IPR001005SANT/Myb domain
CDDcd001679.04E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGCKQLVDKQ KSKHKRGLWS PDEDQKLKDY ILTYGHGCWS SVPINAGLQR NGKSCRLRWI  60
NYLRPGLKRG TFSTEEEDTI LTLHGMLGNK WCQIAQHLPG RTDNEIKNHW HSYLKKRVSK  120
MATNETGQAR SGCTSLHSGN RESSPSSIKL ASQNSSPDSL ADSDQSASLL VDFAKENCKS  180
NLPKVLFSEW FSLEQFSGQE DFNNTTNQDL SKNNFGCNDS VFPDAFMQYV PLMNETTYGN  240
HINQGFHSGT VDGISQTPLR FQDQISANGF EEFISGEFNI HGHVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24161187108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792992.10.0PREDICTED: transcription factor LAF1-like
RefseqXP_016461232.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A1S3ZAI00.0A0A1S3ZAI0_TOBAC; transcription factor LAF1-like
TrEMBLA0A1U7XLS70.0A0A1U7XLS7_NICSY; transcription factor LAF1-like
STRINGXP_009792992.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-58myb domain protein 19