PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792991.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 657aa    MW: 73133.4 Da    PI: 9.6095
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07559607247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009792991.1 559 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 607
                      56777799*****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.64E-9359450IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.0E-4362435No hitNo description
PROSITE profilePS5129414.359553612IPR017930Myb domain
SMARTSM007173.5E-6557610IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-10558608IPR009057Homeodomain-like
SuperFamilySSF466893.21E-15559640IPR009057Homeodomain-like
CDDcd116601.85E-16559609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNK MCAFDLLTTV AGKLLLEGES  60
TPNSTNTVKE DEDTSLKENL YNEGIRERGF FISPIVSEAP VVNHCLSKSK DTLSGQASVI  120
TSSDCSEKLD SAERFINCES KNETRNCSTK VEQEASGFRH FSNCTLGAES KKQMKIDLSN  180
DAKIFGSDFP DLWDRKPTNL VVSDNTVKLS LSTDHVPFGS FPVIRNDVKL TNKDDDENYC  240
GCAQPSTRNK AFRPTPRVGN FRMRKLSDVN PKFEDADIET RHVYNRKNDY KSERSQRDFP  300
FKKRKLYYCN SFSDSDGGSS DRICSSPTKD LNRDAAGYSL ASSARAAVGT SISRGARTSS  360
DSHVKLKIKS FRVPELFVEI PENATVGSLK RTVMEAVTAI LGGGLHIGVV FQGKKVRDDN  420
KTLLQAGISH DDKLDALGFT LEPNPSRASS TLGPESHSRV LPCDTLQPLT RGPPTPTVIC  480
NGIRRGTYNA FSDHPETNLN NFIESDHDSA PSPPDASMEK DAADSRALVP VAAVNAEALA  540
AVPMRKPKRS DTAQRRIRRP FSVFEVEALV QAVEKLGTGR WRDVKMRAFD NAKHRTYVDL  600
KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLIAHGYWSQ KQAKQHMKHQ SETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-555456484107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295304QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-100HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792991.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
RefseqXP_016477517.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A1S4ALB40.0A0A1S4ALB4_TOBAC; telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A1U7XTN70.0A0A1U7XTN7_NICSY; telomere repeat-binding protein 5-like isoform X2
STRINGXP_009792985.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-136TRF-like 2