PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792717.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 420aa    MW: 46828.2 Da    PI: 9.7381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067364383323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk+F  ++ L++H++++
  XP_009792717.1 364 CSQCGKPF-KPEKLHTHMKSC 383
                     ********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061363.0E-4032184IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVKSCNTLTP QHTLKRLMEA QTQGGAEVRR LHIIYFLSRK GRIEHPHLIR VHHFSRNGIR  60
LRDVKRWLGE LRGKDMPESF AWSYKRKYKT GYVWQDLLDE DLITPISDNE YVLKGSEVSK  120
DVSCGEKGVL ATMQKDQTNQ EDHIQDPFMD SSKKTPSEIE EESQNIASET STLTTDSPKL  180
QEEEEKDSEN KTKPEKVNNF ENNSSSFSSS SSSFGSKKTK KKTEDHVKEN GEKITTTPSS  240
EKPSKNPSFD KSRSYSNGAS SIFRNLITCG AVDTNDSGII PIRKNRPSFS SSGEKAVSFS  300
SEICKAEKVG GSQRIFGTAW NQQHQHTNGR KSCDGVYSSS KNKNEFGSRR SVSANYKPVN  360
GPNCSQCGKP FKPEKLHTHM KSCKGMKALA KGANSVTSAT EKTSKDASKV DSVSGTYLTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755136e-39HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792717.10.0PREDICTED: protein UPSTREAM OF FLC isoform X2
TrEMBLA0A1U7XKY40.0A0A1U7XKY4_NICSY; protein UPSTREAM OF FLC isoform X2
STRINGXP_009792716.10.0(Nicotiana sylvestris)