PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009792716.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 431aa MW: 48078.5 Da PI: 9.734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009792716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	375	394	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ L++H++++ XP_009792716.1 375 CSQCGKPF-KPEKLHTHMKSC 394 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	4.0E-40	43	192	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MKHHISSSSI HAQKLLFSGT TIEREIRLME AQTQGGAEVR RLHIIYFLSR KGRIEHPHLI 60 RVHHFSRNGI RLRDVKRWLG ELRGKDMPES FAWSYKRKYK TGYVWQDLLD EDLITPISDN 120 EYVLKGSEVS KDVSCGEKGV LATMQKDQTN QEDHIQDPFM DSSKKTPSEI EEESQNIASE 180 TSTLTTDSPK LQEEEEKDSE NKTKPEKVNN FENNSSSFSS SSSSFGSKKT KKKTEDHVKE 240 NGEKITTTPS SEKPSKNPSF DKSRSYSNGA SSIFRNLITC GAVDTNDSGI IPIRKNRPSF 300 SSSGEKAVSF SSEICKAEKV GGSQRIFGTA WNQQHQHTNG RKSCDGVYSS SKNKNEFGSR 360 RSVSANYKPV NGPNCSQCGK PFKPEKLHTH MKSCKGMKAL AKGANSVTSA TEKTSKDASK 420 VDSVSGTYLT H

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MKHHISSSSI HAQKLLFSGT TIEREIRLME AQTQGGAEVR RLHIIYFLSR KGRIEHPHLI  60
RVHHFSRNGI RLRDVKRWLG ELRGKDMPES FAWSYKRKYK TGYVWQDLLD EDLITPISDN  120
EYVLKGSEVS KDVSCGEKGV LATMQKDQTN QEDHIQDPFM DSSKKTPSEI EEESQNIASE  180
TSTLTTDSPK LQEEEEKDSE NKTKPEKVNN FENNSSSFSS SSSSFGSKKT KKKTEDHVKE  240
NGEKITTTPS SEKPSKNPSF DKSRSYSNGA SSIFRNLITC GAVDTNDSGI IPIRKNRPSF  300
SSSGEKAVSF SSEICKAEKV GGSQRIFGTA WNQQHQHTNG RKSCDGVYSS SKNKNEFGSR  360
RSVSANYKPV NGPNCSQCGK PFKPEKLHTH MKSCKGMKAL AKGANSVTSA TEKTSKDASK  420
VDSVSGTYLT H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	6e-39	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792716.1	0.0	PREDICTED: protein UPSTREAM OF FLC isoform X1
TrEMBL	A0A1U7XSW4	0.0	A0A1U7XSW4_NICSY; protein UPSTREAM OF FLC isoform X1
STRING	XP_009792716.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15