PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009792482.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 445aa MW: 47775.7 Da PI: 6.0811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009792482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	283	305	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 ++s++ +Ka++L +++eY+k+Lq XP_009792482.1 283 NQSERTDKASMLDEVIEYLKQLQ 305 5899******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.00116	282	308	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.4E-6	283	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-6	283	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MNQCVPSWEL EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP 60 NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG 120 LLTMAKDALV PCSANSNYQN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP 180 THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT 240 GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERTDK ASMLDEVIEY 300 LKQLQSQVNM MSRMNMSPAM MLPLAMQQQL QMSMMAAPMG MGMGMGMGMG MTGVAGVLDI 360 NTLSRPNITG LPPFLHPTAA AAAAFMQPMT SWDGSTDRLN AAAVPDPLAA LLACQSQPMT 420 MDAYSRMAAL YQQFLQSAAG SGPKN

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MNQCVPSWEL EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG  120
LLTMAKDALV PCSANSNYQN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP  180
THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT  240
GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERTDK ASMLDEVIEY  300
LKQLQSQVNM MSRMNMSPAM MLPLAMQQQL QMSMMAAPMG MGMGMGMGMG MTGVAGVLDI  360
NTLSRPNITG LPPFLHPTAA AAAAFMQPMT SWDGSTDRLN AAAVPDPLAA LLACQSQPMT  420
MDAYSRMAAL YQQFLQSAAG SGPKN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792482.1	0.0	PREDICTED: transcription factor UNE10 isoform X2
TrEMBL	A0A1U7XKA5	0.0	A0A1U7XKA5_NICSY; transcription factor UNE10 isoform X2
STRING	XP_009792481.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-61	bHLH family protein