PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792481.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 467aa    MW: 50444.9 Da    PI: 7.1178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15282327555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++++P++      K +Ka++L +++eY+k+Lq
  XP_009792481.1 282 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 327
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-19275344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.606277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18282336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13282327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-16282330No hitNo description
SMARTSM003531.1E-17283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MNQCVPSWEL EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG  120
LLTMAKDALV PCSANSNYQN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP  180
THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT  240
GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERKRR DKINQRMKTL  300
QKMVPNSSKT DKASMLDEVI EYLKQLQSQV NMMSRMNMSP AMMLPLAMQQ QLQMSMMAAP  360
MGMGMGMGMG MGMTGVAGVL DINTLSRPNI TGLPPFLHPT AAAAAAFMQP MTSWDGSTDR  420
LNAAAVPDPL AALLACQSQP MTMDAYSRMA ALYQQFLQSA AGSGPKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274289RKRAAAIHNQSERKRR
2285290ERKRRD
3286291RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792481.10.0PREDICTED: transcription factor UNE10 isoform X1
TrEMBLA0A1U7XS930.0A0A1U7XS93_NICSY; transcription factor UNE10 isoform X1
STRINGXP_009792481.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-83bHLH family protein