PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009792399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 21779 Da PI: 4.3517 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49 | 1.5e-15 | 38 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r++ + +Wv+eIr+p++ ++r++lg+f t+e+Aa+a++ a+++l+g XP_009792399.1 38 NFRGIRQR--NCKWVSEIREPRK---TTRIWLGTFSTPEMAAAAYDVAALALKG 86 589**976..58********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-9 | 37 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.89E-18 | 37 | 96 | No hit | No description |
SMART | SM00380 | 3.5E-30 | 38 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.913 | 38 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-27 | 38 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 39 | 96 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MADHFFDVTP SDNPPPSENF SPTGSASGNV LSPRRHPNFR GIRQRNCKWV SEIREPRKTT 60 RIWLGTFSTP EMAAAAYDVA ALALKGPDAP LNFPDSAYSY PVPASLSATD IRAAAANAAA 120 ARAPPISESN SHEVLAETEN YEGASTTVAA TFVDEEEIFG MPKLLDEMAE AMLVSPPRMH 180 QSTSYDESPE NSDADSLWSY P |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792399.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Refseq | XP_016436102.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 3e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1S3X882 | 1e-144 | A0A1S3X882_TOBAC; ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | A0A1U7XZJ2 | 1e-144 | A0A1U7XZJ2_NICSY; ethylene-responsive transcription factor ERF027-like | ||||
STRING | XP_009792399.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52020.1 | 3e-46 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|