PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009792341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25583 Da PI: 7.8877 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95 | 8.5e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+ XP_009792341.1 4 SCNGCRVLRKGCNEKCSIKPCLqwiksPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWQLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_009792341.1 99 AVEAVLSGA 107 **9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.615 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.1E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCNEKCS IKPCLQWIKS PEAQSNATLF LAKFYGRAGL LNLINSGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASIE KLSPDSAANT 120 VCPSLKACDI RHLSKANDST PDLHKVKMRT KFKRVSAKPQ QRNQSPEVDD AARVMWSWSH 180 MEEEAIGSPS RDSGLSQQRD GESGDADSGS VETVEASLAK LDESDVGLEL TLGCSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792341.1 | 1e-175 | PREDICTED: LOB domain-containing protein 41-like | ||||
Refseq | XP_016491547.1 | 1e-175 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 8e-76 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1S4BRN6 | 1e-173 | A0A1S4BRN6_TOBAC; LOB domain-containing protein 41-like | ||||
TrEMBL | A0A1U7XRS6 | 1e-173 | A0A1U7XRS6_NICSY; LOB domain-containing protein 41-like | ||||
STRING | XP_009792341.1 | 1e-174 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-78 | LOB domain-containing protein 41 |