PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792091.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family E2F/DP
Protein Properties Length: 345aa    MW: 38006.4 Da    PI: 8.2358
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792091.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-2788170271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_009792091.1  88 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdptnghessdqrqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 170
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.7E-1273345IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.4E-4683175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.4E-3587170IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.2E-2589170IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-2190171IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.09E-43176278IPR014889Transcription factor DP, C-terminal
SMARTSM011384.3E-69177343IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.12E-42177293No hitNo description
PfamPF087811.2E-42178315IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVNNLEEGGK NPSEVSRRSW GPTTTVSGQS VSTSGSVGSP SAVATPGSEN TFVRLNNLDI  60
HADDAASQGA AANRKKKRGQ RATGGDKSGR GLRQFSMKVC EKVESKGRTT YNEVADELVA  120
EFSDPTNGHE SSDQRQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTDANDIE  180
ELKAERLSLR NRIEKKAAYL EELEEQYVGL QNLIKRNKQL YGSGNAPSGG VALPFILVQT  240
RPHATVEVEI SEDMQLVHFD FNSTPFELHD DNYVLKAMKF CGRQKTDVVA QNISADGAEG  300
SSSSLANMFQ HQISHTSVSN TPGRRPTPTS PPLPGILKAR IKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3981176194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6845580.0KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792084.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_009792091.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_016445600.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_019232112.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_019232113.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-156DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1J6L0240.0A0A1J6L024_NICAT; Transcription factor-like protein dpb
TrEMBLA0A1S3Y0J80.0A0A1S3Y0J8_TOBAC; transcription factor-like protein DPB isoform X1
TrEMBLA0A1U7XYQ30.0A0A1U7XYQ3_NICSY; transcription factor-like protein DPB isoform X1
STRINGXP_009792084.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-129Transcription factor DP