PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009791967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 377aa MW: 42465.3 Da PI: 4.4488 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 130 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g XP_009791967.1 130 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 179 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 129 | 186 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.08E-33 | 130 | 186 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-21 | 130 | 186 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.657 | 130 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 130 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 130 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MDHSMLCPIK YTEHKKTIRK VTKPSFIKPK KITETRKYSE YSPTIPRTIR ISVTDPDATD 60 SSSDEDELFG RKRVKRYINE ISIETSPIND VKPLNSGKAI KKRAAEASTP KQKALKVKVV 120 QPPPDGTVRK FRGVRQRPWG KWAAEIRDPA RRVRLWLGTY DTAEEAAMVY DNAAIKLRGP 180 DALTNFITPP MKPEEVNVAS NSGYESGDES HNLSSPTSVL RFRTSQSSEE AEQQSGSEPI 240 LEETKGDVCC PLVEEEAVLD SMDNSEQTVE HLECQGETSI IIPDYSNDYL PTDVPFLDDF 300 FNFEAAEQTL FDDTTSFAND LCTSYDDVSS WDFANDLLLD HEIVKFEDSF QDLGALEVDN 360 YFRDIGDFSS VDALMAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 129 | 186 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-21 | 129 | 186 | 4 | 62 | ATERF1 |
3gcc_A | 4e-21 | 129 | 186 | 4 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791967.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A1U7XIT5 | 0.0 | A0A1U7XIT5_NICSY; ethylene-responsive transcription factor CRF4-like | ||||
STRING | XP_009791967.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-64 | cytokinin response factor 4 |