PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791854.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 711aa    MW: 79191.1 Da    PI: 5.4173
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07120141426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C ff+r G+C+ Gd+C F+H 
  XP_009791854.1 120 VPCVFFQR-GICSKGDKCAFMHA 141
                     69******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7932655IPR000571Zinc finger, CCCH-type
PfamPF156632.5E-112781No hitNo description
SMARTSM003560.00232754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2355783IPR000571Zinc finger, CCCH-type
SMARTSM003560.125982IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277116143IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6117142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6118141IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5120141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4121141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MVGPTPPLPQ LQTQPTAPSS AEDEALKRNT DCVYFLASPL TCKKGSECEY RHSDMARLNP  60
RDCWYWLNGN CLNPKCAFRH PPLDGFLEAQ APTVIGSSVA PVVSVAPMPQ GPYASSKQGV  120
PCVFFQRGIC SKGDKCAFMH APNSISSKPL QPPVSTASSE TPTAKNAFGG VQNAVQGKKL  180
LQTNHPKPSV LPKPVWKLEN HLTKKENTFD EKVLPPNSVI NRESTRYKPS MPATNGNSLS  240
GPNRVQQPIG LDDHSSMQNK DDEISREPSP GFDVLVDDEL RGSDYYHEED QYGGTRSNGG  300
RNEYDMGDSA DYDSVADIDR DMYRDGRGYD SYDRLPSRYA WEQPIASSER IPGGSAHLER  360
RRYGTVDRPE QVKMSDLRHR LSKHRRGNGL KSVIGHDFSS EKNVEDRANK SSRRDAHYVP  420
SHDSSLSGRL RGRIKLPVRS SSPTDRAELR LNREMDRARY RGRLSSERPQ LSSYQGRLQD  480
RIKGRVQEDL SNGDRNNRGP RLRRDIINDN NSNFVRPKSL VELKGRKTAE SNEQNLNEQQ  540
HLGKRKFQKL DSGEDQSFEG PMSLQEILKR KRGGGAGMTS GGSEDDEHER KGQTVMTIGN  600
VVDFPSAIIK NGSGLSIQQE EESKLAADHQ SPLCRSANEL EAEEEMIMEG SDAQGHDEGY  660
NQVDGDDDYE PVEGEDYTLE EGENGDLDDE YLDDDDDDGD DFAKKLGVVS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791854.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
RefseqXP_016443422.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1S3XUQ10.0A0A1S3XUQ1_TOBAC; zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1U7XY260.0A0A1U7XY26_NICSY; zinc finger CCCH domain-containing protein 17-like
STRINGXP_009791854.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633