PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009791840.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 1098aa MW: 122804 Da PI: 7.8627

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.4e-08	5	40	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++a+ + Rt +++ XP_009791840.1 5 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 40 7***************99.****998.7887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.689	1	54	IPR017884	SANT domain
SMART	SM00717	1.7E-4	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.01E-9	4	50	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-6	5	41	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-4	5	40	IPR009057	Homeodomain-like
CDD	cd00167	6.93E-6	5	40	No hit	No description
SMART	SM01135	2.5E-58	592	693	IPR033471	DIRP domain
Pfam	PF06584	1.7E-33	592	692	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence Send to blast
MLGPEWSEED LTRFYQAYRK YGKDWKKVAA AVKPRTSEMV EALYMMNRAY LSLPEGTASV 60 VGLIAMMTDH YCNLAASDSE QESNEDAGTS RKPQKRARGK VQSNISKAYE MTSPTLAASH 120 GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SCGNPKGEKN FSPSRQSLKL QADDTDDDVK 180 IALVLTEASQ RGGSPQVSQT PNRRTDSAMS SPVETAERKH VKIGMGNAKL LSNEVDEEEG 240 SMEADTGELL RYKNDSVETG TFGRTAQKGR RPYGKKLEID DSGANHFDDI KEACSGTEEG 300 QILGVVRGKL EMEATYEKNS RTSLQGPRKR SKKVLFSRDE SSAFDALQTL ADLSLMMPTA 360 ENEDESMIQF NDELDDHVDE SGSLEAVPAN RHRDKRGSGG VRSRWSQPLS KFEVASTTKS 420 KHGKVTSTDV SAVPETKQAR RAHKAMSSKA RKTEGHVNNN VAGSEEAEAK EASKKSTYKG 480 KRSYQSASPK LIKDQEPSSC ADPRTERSDS AQSTAEIPVA NQVNLPTKVR SRRKMDLKKP 540 QRQKDLKIPD KSLDDTSASF TALHDRAFSL KENISNCLSN HQVRRWCTYE WFYSAIDYPW 600 FAKRDFVEYL NHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLNEEKEK LNQYRESVRT 660 HYTELREGTR EGLPTDLARP LSVGQRVIAI HPKTREIHDG SVLTVDRSRC RVQFDRPELG 720 VEFVMDIDCM PLNPFENMPT LLTRRADAVD KFFESFNELK VNARVNEYMK FPACDNMENG 780 NVFSHFSPPS HPISDLLKQT KVASAEVDMQ SRFGVMETAI YQSTAYSKSS GVAQIQAKEA 840 DVQALAELAR ALDKKEAVVS ELRRMNDDVL ENQTSNDCSL KDSETFKKQY AAMLIQLNEV 900 NEEVSSALYR LRQRNTYQGS IPLAFPRPVP NFADPSTLST FDRCTSQSQE SGFLVNEIIE 960 SSKIKARTMV DAAVQAMLSL TDRDNTTEKI EEAIGYVNDR IPLDDSCMPT QPTDPKSKNM 1020 SDKNEAEIPS ELITKCVATL LMIQKCSERQ FPPADVAKVL DSAVASLQPC CSQNFPIYAE 1080 IQQCMGIIRN QILALVPM

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence Send to blast

MLGPEWSEED LTRFYQAYRK YGKDWKKVAA AVKPRTSEMV EALYMMNRAY LSLPEGTASV  60
VGLIAMMTDH YCNLAASDSE QESNEDAGTS RKPQKRARGK VQSNISKAYE MTSPTLAASH  120
GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SCGNPKGEKN FSPSRQSLKL QADDTDDDVK  180
IALVLTEASQ RGGSPQVSQT PNRRTDSAMS SPVETAERKH VKIGMGNAKL LSNEVDEEEG  240
SMEADTGELL RYKNDSVETG TFGRTAQKGR RPYGKKLEID DSGANHFDDI KEACSGTEEG  300
QILGVVRGKL EMEATYEKNS RTSLQGPRKR SKKVLFSRDE SSAFDALQTL ADLSLMMPTA  360
ENEDESMIQF NDELDDHVDE SGSLEAVPAN RHRDKRGSGG VRSRWSQPLS KFEVASTTKS  420
KHGKVTSTDV SAVPETKQAR RAHKAMSSKA RKTEGHVNNN VAGSEEAEAK EASKKSTYKG  480
KRSYQSASPK LIKDQEPSSC ADPRTERSDS AQSTAEIPVA NQVNLPTKVR SRRKMDLKKP  540
QRQKDLKIPD KSLDDTSASF TALHDRAFSL KENISNCLSN HQVRRWCTYE WFYSAIDYPW  600
FAKRDFVEYL NHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLNEEKEK LNQYRESVRT  660
HYTELREGTR EGLPTDLARP LSVGQRVIAI HPKTREIHDG SVLTVDRSRC RVQFDRPELG  720
VEFVMDIDCM PLNPFENMPT LLTRRADAVD KFFESFNELK VNARVNEYMK FPACDNMENG  780
NVFSHFSPPS HPISDLLKQT KVASAEVDMQ SRFGVMETAI YQSTAYSKSS GVAQIQAKEA  840
DVQALAELAR ALDKKEAVVS ELRRMNDDVL ENQTSNDCSL KDSETFKKQY AAMLIQLNEV  900
NEEVSSALYR LRQRNTYQGS IPLAFPRPVP NFADPSTLST FDRCTSQSQE SGFLVNEIIE  960
SSKIKARTMV DAAVQAMLSL TDRDNTTEKI EEAIGYVNDR IPLDDSCMPT QPTDPKSKNM  1020
SDKNEAEIPS ELITKCVATL LMIQKCSERQ FPPADVAKVL DSAVASLQPC CSQNFPIYAE  1080
IQQCMGIIRN QILALVPM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-115	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791837.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009791838.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009791839.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1U7XIF9	0.0	A0A1U7XIF9_NICSY; protein ALWAYS EARLY 3 isoform X1
STRING	XP_009791837.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]