PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009791839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 1137aa MW: 127218 Da PI: 8.5476 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.7e-08 | 44 | 79 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++a+ + Rt +++ XP_009791839.1 44 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 79 7*****************99.******998.7887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-9 | 39 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-4 | 41 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-4 | 44 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 44 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.23E-6 | 44 | 79 | No hit | No description |
SMART | SM01135 | 2.5E-58 | 631 | 732 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.8E-33 | 631 | 731 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1137 aa Download sequence Send to blast |
MAPARKSRSV NKRFSPTTEI SPSKDDSAKK NLRKRKLSDM LGPEWSEEDL TRFYQAYRKY 60 GKDWKKVAAA VKPRTSEMVE ALYMMNRAYL SLPEGTASVV GLIAMMTDHY CNLAASDSEQ 120 ESNEDAGTSR KPQKRARGKV QSNISKAYEM TSPTLAASHG CLTLLKKKRS GGSRPRAVGK 180 RTPRFPVSFS CGNPKGEKNF SPSRQSLKLQ ADDTDDDVKI ALVLTEASQR GGSPQVSQTP 240 NRRTDSAMSS PVETAERKHV KIGMGNAKLL SNEVDEEEGS MEADTGELLR YKNDSVETGT 300 FGRTAQKGRR PYGKKLEIDD SGANHFDDIK EACSGTEEGQ ILGVVRGKLE MEATYEKNSR 360 TSLQGPRKRS KKVLFSRDES SAFDALQTLA DLSLMMPTAE NEDESMIQFN DELDDHVDES 420 GSLEAVPANR HRDKRGSGGV RSRWSQPLSK FEVASTTKSK HGKVTSTDVS AVPETKQARR 480 AHKAMSSKAR KTEGHVNNNV AGSEEAEAKE ASKKSTYKGK RSYQSASPKL IKDQEPSSCA 540 DPRTERSDSA QSTAEIPVAN QVNLPTKVRS RRKMDLKKPQ RQKDLKIPDK SLDDTSASFT 600 ALHDRAFSLK ENISNCLSNH QVRRWCTYEW FYSAIDYPWF AKRDFVEYLN HVGLGHVPRL 660 TRVEWGVIRS SLGKPRRFSE QFLNEEKEKL NQYRESVRTH YTELREGTRE GLPTDLARPL 720 SVGQRVIAIH PKTREIHDGS VLTVDRSRCR VQFDRPELGV EFVMDIDCMP LNPFENMPTL 780 LTRRADAVDK FFESFNELKV NARVNEYMKF PACDNMENGN VFSHFSPPSH PISDLLKQTK 840 VASAEVDMQS RFGVMETAIY QSTAYSKSSG VAQIQAKEAD VQALAELARA LDKKEAVVSE 900 LRRMNDDVLE NQTSNDCSLK DSETFKKQYA AMLIQLNEVN EEVSSALYRL RQRNTYQGSI 960 PLAFPRPVPN FADPSTLSTF DRCTSQSQES GFLVNEIIES SKIKARTMVD AAVQAMLSLT 1020 DRDNTTEKIE EAIGYVNDRI PLDDSCMPTQ PTDPKSKNMS DKNEAEIPSE LITKCVATLL 1080 MIQKCSERQF PPADVAKVLD SAVASLQPCC SQNFPIYAEI QQCMGIIRNQ ILALVPM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 35 | KNLRKRK |
2 | 31 | 36 | LRKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-115 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791837.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_009791838.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_009791839.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A1U7XIF9 | 0.0 | A0A1U7XIF9_NICSY; protein ALWAYS EARLY 3 isoform X1 | ||||
STRING | XP_009791837.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Publications ? help Back to Top | |||
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