PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791743.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 356aa    MW: 41129 Da    PI: 6.2369
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-5381371129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kk++++++++ +vik++d+yk+ePwdL++  ++ +ee+ +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_009791743.1   8 VPPGFRFHPTDEELVDYYLRKKITSRRIDV-DVIKDIDLYKIEPWDLQElcRMGTEEQsDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 101
                     69****************************.9***************954555554445************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s k+ l+g++ktLv+ykgrap+g+k+d +mheyrle
  XP_009791743.1 102 YS-KHDLIGMRKTLVYYKGRAPNGQKSDFIMHEYRLE 137
                     **.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-585157IPR003441NAC domain
PROSITE profilePS5100556.9028157IPR003441NAC domain
PfamPF023654.1E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMNSFSQVPP GFRFHPTDEE LVDYYLRKKI TSRRIDVDVI KDIDLYKIEP WDLQELCRMG  60
TEEQSDWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKA IYSKHDLIGM RKTLVYYKGR  120
APNGQKSDFI MHEYRLETDP NGAPQEEGWV ICRVFKKKIA AIRMDTSEHG SPIWYDDQLS  180
FMPDNMDSPK PQYPPSNTFT NYNHHYPNNY PNCKKELDNL HYQISPHHQN QQFLQLPLLE  240
INSKLLAAAP PGISCSSMPM PIFGINVNQE HMHPTFGNNV NRGCTNDQVE DQVTDWRVLD  300
KFVASQLSQE EENNYSNAAN ARGDDSNLMV NNLDKQELAP ENTSTASSSS QIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-48815815169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754453e-99HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791743.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_016461118.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-134NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1S3Z9R10.0A0A1S3Z9R1_TOBAC; NAC domain-containing protein 7-like
TrEMBLA0A1U7XLH60.0A0A1U7XLH6_NICSY; NAC domain-containing protein 7-like
STRINGXP_009791743.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-111NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]