PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009791664.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 381aa MW: 43374.1 Da PI: 9.197

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.2e-32	77	130	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_009791664.1 77 PRLRWTPELHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.0E-30	73	131	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.249	73	133	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-16	74	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-23	77	132	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-10	78	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MKRGSSAEDS KSSPKNQIEF EEEEEEKEEK EDDLETEENS KLPEGTRTSS SNSTVEENGK 60 KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKTDDPNQIS TDGRFLIENG DHHIFNLSQL PRLQGTFNQT SSSSLRYEDS 180 LWNRQANSSM YNPYNINIGG ASRINTRHGF SSHINNGHSQ GQLFPWNKTL QIEKKPQHFH 240 NQRFWSTQIG TSSTKQNLLM TLPIDRDRDR GRDQEIMKTQ MRTNNSLSLR GKGWTTEAGT 300 ITTSAPSKRK IQDLEVNLDL NLSLKITRED DDDHKKRLKA EEVGNLLSLS LFSSSATSMD 360 DQENNGGEKN TRMTSTLDLT L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MKRGSSAEDS KSSPKNQIEF EEEEEEKEEK EDDLETEENS KLPEGTRTSS SNSTVEENGK  60
KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKTDDPNQIS TDGRFLIENG DHHIFNLSQL PRLQGTFNQT SSSSLRYEDS  180
LWNRQANSSM YNPYNINIGG ASRINTRHGF SSHINNGHSQ GQLFPWNKTL QIEKKPQHFH  240
NQRFWSTQIG TSSTKQNLLM TLPIDRDRDR GRDQEIMKTQ MRTNNSLSLR GKGWTTEAGT  300
ITTSAPSKRK IQDLEVNLDL NLSLKITRED DDDHKKRLKA EEVGNLLSLS LFSSSATSMD  360
DQENNGGEKN TRMTSTLDLT L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791664.1	0.0	PREDICTED: uncharacterized protein LOC104238869 isoform X2
TrEMBL	A0A1U7XXG3	0.0	A0A1U7XXG3_NICSY; uncharacterized protein LOC104238869 isoform X2
STRING	XP_009791663.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-48	G2-like family protein