PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009791663.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 382aa MW: 43461.1 Da PI: 9.197

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.2e-32	77	130	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_009791663.1 77 PRLRWTPELHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.249	73	133	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-30	73	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-16	74	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-23	77	132	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-10	78	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MKRGSSAEDS KSSPKNQIEF EEEEEEKEEK EDDLETEENS KLPEGTRTSS SNSTVEENGK 60 KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKTDDPNQTV STDGRFLIEN GDHHIFNLSQ LPRLQGTFNQ TSSSSLRYED 180 SLWNRQANSS MYNPYNINIG GASRINTRHG FSSHINNGHS QGQLFPWNKT LQIEKKPQHF 240 HNQRFWSTQI GTSSTKQNLL MTLPIDRDRD RGRDQEIMKT QMRTNNSLSL RGKGWTTEAG 300 TITTSAPSKR KIQDLEVNLD LNLSLKITRE DDDDHKKRLK AEEVGNLLSL SLFSSSATSM 360 DDQENNGGEK NTRMTSTLDL TL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MKRGSSAEDS KSSPKNQIEF EEEEEEKEEK EDDLETEENS KLPEGTRTSS SNSTVEENGK  60
KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKTDDPNQTV STDGRFLIEN GDHHIFNLSQ LPRLQGTFNQ TSSSSLRYED  180
SLWNRQANSS MYNPYNINIG GASRINTRHG FSSHINNGHS QGQLFPWNKT LQIEKKPQHF  240
HNQRFWSTQI GTSSTKQNLL MTLPIDRDRD RGRDQEIMKT QMRTNNSLSL RGKGWTTEAG  300
TITTSAPSKR KIQDLEVNLD LNLSLKITRE DDDDHKKRLK AEEVGNLLSL SLFSSSATSM  360
DDQENNGGEK NTRMTSTLDL TL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791663.1	0.0	PREDICTED: uncharacterized protein LOC104238869 isoform X1
TrEMBL	A0A1U7XL97	0.0	A0A1U7XL97_NICSY; uncharacterized protein LOC104238869 isoform X1
STRING	XP_009791663.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-49	G2-like family protein