PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 274aa    MW: 31228.6 Da    PI: 6.5226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-1896145255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  XP_009791350.1  96 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALAIKG 145
                     69****888.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-3396159IPR001471AP2/ERF domain
PfamPF008471.4E-1296145IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2196154IPR016177DNA-binding domain
PROSITE profilePS5103223.31496153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3196154IPR001471AP2/ERF domain
CDDcd000182.43E-3197154No hitNo description
PRINTSPR003673.6E-1097108IPR001471AP2/ERF domain
PRINTSPR003673.6E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEDQEQRINL EIRADYHRRG FFSNSTSNVL NSPSNTTSSS SSSSSSSFSS SNELIRKDYD  60
SKKSSRKVQE LIKINENIGE EKKKRKKNED DNKHPTYRGV RKRSWGKWVS EIREPRKKSR  120
IWLGTYPTAQ MAARAHDVAA LAIKGDSAYL NFPHFAHLLP CPTSTSPKDI QTAAAKAATI  180
TFPEENEEIR AETSRVELPS CHSSTNLFLE NIKELPNSLS REDDDTFFDL PDLSIDVVDQ  240
NDRYWCTMST WQQPVGADIT GFRLEEPFLW ECPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18941541273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791350.10.0PREDICTED: ethylene-responsive transcription factor ERF039
RefseqXP_016441653.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ78e-55ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S3XP060.0A0A1S3XP06_TOBAC; ethylene-responsive transcription factor ERF039-like
TrEMBLA0A1U7XXU70.0A0A1U7XXU7_NICSY; ethylene-responsive transcription factor ERF039
STRINGXP_009791350.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]