PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791230.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 500aa    MW: 55825.6 Da    PI: 8.5177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-3183140260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDg++WrKYGqK vkgs+fprsYY+Ct+++Cpv+kkve++  +++v+ei+Y+g Hnh+k
  XP_009791230.1  83 DDGFTWRKYGQKRVKGSNFPRSYYKCTQQSCPVRKKVECAP-NGQVIEIVYNGAHNHPK 140
                     8****************************************.***************85 PP
2WRKY102.52.3e-32291348259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct agC v+k+ver++++ k v++tYeg+Hnhe
  XP_009791230.1 291 EDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCIVRKHVERASDNLKSVITTYEGKHNHE 348
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-2776140IPR003657WRKY domain
SuperFamilySSF1182907.59E-2481140IPR003657WRKY domain
SMARTSM007742.3E-3382140IPR003657WRKY domain
PfamPF031061.1E-2483139IPR003657WRKY domain
PROSITE profilePS5081121.57483141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-34275350IPR003657WRKY domain
SuperFamilySSF1182906.8E-28283350IPR003657WRKY domain
PROSITE profilePS5081136.873285350IPR003657WRKY domain
SMARTSM007742.7E-36290349IPR003657WRKY domain
PfamPF031068.4E-25291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSSLPCRPAV LTIPPGISPA ALLDSPVMFP NSVTPTETNV QQTLNSIELT NKQIPQQEEF  60
TKKQNQFEQK GVFISNIIPS SSDDGFTWRK YGQKRVKGSN FPRSYYKCTQ QSCPVRKKVE  120
CAPNGQVIEI VYNGAHNHPK TQSIRQPSMD NSYAVRDVKE IGQENASVWR NQQFECNKNI  180
TNHSANGLKR TSSASVLTEV SDPMSTNPKS MNVFESAGTP ELSSTLTSYD GDDGDWATQE  240
GTFLGDDVNE YELETKRRKK KSYSAEPSLL SRTVREPKVV LQVESDIDIL EDGYRWRKYG  300
QKVVKGNPNP RSYYKCTNAG CIVRKHVERA SDNLKSVITT YEGKHNHEVP STNETNGVPG  360
HIRSASTLNG QPNCMTSRKS VKGSNCRMQV QDLPFPFERK PFVGSEYLRP SFVGSYLGDL  420
SFGACSLQLP NFPLPLPLPS RMSFPARLNE PPLGDFHLNN HHLLPNGASN SFLAVGNMQH  480
INDDNNNSSL LKAKEEIQWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3283351878Probable WRKY transcription factor 4
2lex_A3e-3283351878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2387898e-48AC238789.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0142A20, complete sequence.
GenBankHG9754448e-48HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755178e-48HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791230.10.0PREDICTED: probable WRKY transcription factor 26 isoform X1
RefseqXP_009791231.10.0PREDICTED: probable WRKY transcription factor 26 isoform X1
TrEMBLA0A1U7XXG70.0A0A1U7XXG7_NICSY; probable WRKY transcription factor 26 isoform X1
STRINGXP_009791230.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-74WRKY DNA-binding protein 4