PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791053.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 338aa    MW: 38751.5 Da    PI: 7.2919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13159205354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + h ++Er+RR+++ ++f +L  +lP +     kK++Ka+iLe+A++++k+L
  XP_009791053.1 159 QHHIIAERKRREKLSQRFVTLSAILPGL-----KKVDKASILEQAIRHVKEL 205
                     5799************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16159219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10159205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.48E-12159210No hitNo description
Gene3DG3DSA:4.10.280.103.1E-15160218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-13162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDNSSLRWFS RTGEAGAYYS NEKKSVDDFT TQKSTISEDG EIREVSLSPD RDSRHAYSRS  60
NYFNQENKSK VAKFDFSLIT PLENQPKMNT NMLSFTNNVD SVPSQQVCKI EAVDEMYLCD  120
SDHKYFQFLN SKSGYDQKDS QATKLGQGQK RERLPSVDQH HIIAERKRRE KLSQRFVTLS  180
AILPGLKKVD KASILEQAIR HVKELKEKVQ QLEEQEKTRS EKSVMFVNKS QLEEDDHSSS  240
SSAENNNCSS GDADIEVRFS DKNVLIRITC ERRNAFVQNI HNEIEKLHLS IVQSCMMSFG  300
KHAIDVTVVA QMDESFCMTL KDLVKHVRIV TARLMTQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169ERKRRE
2165170RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791053.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016480480.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4AV820.0A0A1S4AV82_TOBAC; transcription factor bHLH18-like
TrEMBLA0A1U7XJJ50.0A0A1U7XJJ5_NICSY; transcription factor bHLH18-like
STRINGXP_009791053.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-38bHLH family protein