PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790928.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 273aa    MW: 31090.4 Da    PI: 9.3911
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.72.2e-27132186155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ Wt++LH++F e+v++LGG++kAtPk+il+lm+   L+++++kSHLQkYR+
  XP_009790928.1 132 KRRITWTQDLHDQFCECVNRLGGAKKATPKAILKLMNSYELSISNIKSHLQKYRV 186
                     689***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-14129186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-24130187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-21132186IPR006447Myb domain, plants
PfamPF002492.7E-7136185IPR001005SANT/Myb domain
PfamPF143796.1E-16219265IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPMCSHELEM YDTASTSNNP LDKYDLADEN FKSRDTLHSL VQSSVSFRHK PESSTKNLLQ  60
QNKSALKGAI ASRHPYPSMA RGRQVKKDSF DSRIIKPCYV CQLEKRPQSP PNESVCISSS  120
NVTPERAETT KKRRITWTQD LHDQFCECVN RLGGAKKATP KAILKLMNSY ELSISNIKSH  180
LQKYRVTCDV TVSLKDAVKT EGSPRRSSFP AHGPETCPQI LEALKLQISV QQSLYEQLEI  240
QRSLQLRIEE QAKQLKEMFD RQAETNKNFQ LSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-14132185255Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790927.10.0PREDICTED: uncharacterized protein LOC104238298 isoform X2
RefseqXP_009790928.10.0PREDICTED: putative two-component response regulator-like APRR6 isoform X3
SwissprotQ0WVU34e-37PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A1U7XFT10.0A0A1U7XFT1_NICSY; uncharacterized protein LOC104238298 isoform X2
TrEMBLA0A1U7XJ730.0A0A1U7XJ73_NICSY; putative two-component response regulator-like APRR6 isoform X3
STRINGXP_009790926.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-39G2-like family protein