PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009790927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 321aa MW: 36373.3 Da PI: 8.7297 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.4 | 2.9e-27 | 180 | 234 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LH++F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_009790927.1 180 KRRITWTQDLHDQFCECVNRLGGAKKATPKAILKLMNSYELSISNIKSHLQKYRV 234 689***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-14 | 177 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 178 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-21 | 180 | 234 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-7 | 184 | 233 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.8E-16 | 267 | 313 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MLIKGVSGCD DSLYGILCKH LESRTSKFSA SESSRTFGQF CENSDDHIMP MCSHELEMYD 60 TASTSNNPLD KYDLADENFK SRDTLHSLVQ SSVSFRHKPE SSTKNLLQQN KSALKGAIAS 120 RHPYPSMARG RQVKKDSFDS RIIKPCYVCQ LEKRPQSPPN ESVCISSSNV TPERAETTKK 180 RRITWTQDLH DQFCECVNRL GGAKKATPKA ILKLMNSYEL SISNIKSHLQ KYRVTCDVTV 240 SLKDAVKTEG SPRRSSFPAH GPETCPQILE ALKLQISVQQ SLYEQLEIQR SLQLRIEEQA 300 KQLKEMFDRQ AETNKNFQLS V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-14 | 180 | 233 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790927.1 | 0.0 | PREDICTED: uncharacterized protein LOC104238298 isoform X2 | ||||
Swissprot | Q0WVU3 | 2e-36 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A1U7XFT1 | 0.0 | A0A1U7XFT1_NICSY; uncharacterized protein LOC104238298 isoform X2 | ||||
STRING | XP_009790926.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 8e-39 | G2-like family protein |