PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009790926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 326aa MW: 36945.9 Da PI: 8.7297 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.3 | 2.9e-27 | 185 | 239 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LH++F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_009790926.1 185 KRRITWTQDLHDQFCECVNRLGGAKKATPKAILKLMNSYELSISNIKSHLQKYRV 239 689***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.7E-14 | 182 | 239 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 183 | 240 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-21 | 185 | 239 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-7 | 189 | 238 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.9E-16 | 272 | 318 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MPSFLQLIKG VSGCDDSLYG ILCKHLESRT SKFSASESSR TFGQFCENSD DHIMPMCSHE 60 LEMYDTASTS NNPLDKYDLA DENFKSRDTL HSLVQSSVSF RHKPESSTKN LLQQNKSALK 120 GAIASRHPYP SMARGRQVKK DSFDSRIIKP CYVCQLEKRP QSPPNESVCI SSSNVTPERA 180 ETTKKRRITW TQDLHDQFCE CVNRLGGAKK ATPKAILKLM NSYELSISNI KSHLQKYRVT 240 CDVTVSLKDA VKTEGSPRRS SFPAHGPETC PQILEALKLQ ISVQQSLYEQ LEIQRSLQLR 300 IEEQAKQLKE MFDRQAETNK NFQLSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-14 | 185 | 238 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790926.1 | 0.0 | PREDICTED: uncharacterized protein LOC104238298 isoform X1 | ||||
TrEMBL | A0A1U7XMT5 | 0.0 | A0A1U7XMT5_NICSY; uncharacterized protein LOC104238298 isoform X1 | ||||
STRING | XP_009790926.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA23735 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-38 | G2-like family protein |