PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790908.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 474aa    MW: 51617.9 Da    PI: 8.5429
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-175599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE++++++a+k++G   W++I +++g ++t+ q++s+ qk+
   XP_009790908.1 55 RERWTEEEHKKFLEAIKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 99
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-1649103IPR009057Homeodomain-like
PROSITE profilePS5129421.89650104IPR017930Myb domain
TIGRFAMsTIGR015574.9E-1753102IPR006447Myb domain, plants
SMARTSM007171.4E-1354102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-105595IPR009057Homeodomain-like
PfamPF002492.8E-145598IPR001005SANT/Myb domain
CDDcd001677.78E-1157100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MASEEMVDQD QGGESGMDSI RSSRNGISSD VGASSTRSIQ LKEQARKPYT ISKQRERWTE  60
EEHKKFLEAI KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF SKVVRESNNG DASSVKPIEI  120
PPPRPKRKPM HPYPRKLATP VKSGTLVPEK PTRSISPNMS MSEQKNQSPA SVLSAHGSDA  180
LGTVDSSKRN GSASPVSPAG GGNSDGFVLS EPPNFILQDS SSLAQACVKL ELLPQEVNFV  240
KEGSAETSST PCLKLFGKTV LVTESQRPRP TSGTCKIETD VNDEAALPTA SLNLMPMKFT  300
ASDSDCGSST LTVGTPPPFY YSPSQNENQW PTGCASATLL PWGSSCASVS FPCIQVLNPI  360
PIKGRPLFND NELEDKQNQK EGSSTGSNTE PVSAEMGGDK NMDIEAQSSQ HPLEKARKEL  420
SSRPSETPSL VRRASSTKRV KGFVPYKRCL AERGTNPSML SCEEREEQRT RLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790908.10.0PREDICTED: protein REVEILLE 1-like isoform X2
TrEMBLA0A1U7XJ540.0A0A1U7XJ54_NICSY; protein REVEILLE 1-like isoform X2
STRINGXP_009790907.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-50MYB_related family protein